Genomics
Genome feature
| Region: |
mRNA
|
Length: |
2308
 |
| Location: | Chr5:20582083-20584547 reverse strand | ||
| Transcript | Exons | Introns | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SPL13A
AT5G50570.2
2308 |
|
|
||||||||||||||
|
SPL13A
AT5G50570.1
1938 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 6, Exons: 8, Five Prime UTRs: 3, Genes: 2, mRNAs: 7, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G50570:CDS:3 |
506
|
Chr5: 20582555-20583060 | Arabidopsis thaliana |
| AT5G50570:CDS:2 |
134
|
Chr5: 20583147-20583280 | Arabidopsis thaliana |
| AT5G50570:CDS:1 |
440
|
Chr5: 20583352-20583791 | Arabidopsis thaliana |
| AT5G50570:CDS:3.1 |
506
|
Chr5: 20582555-20583060 | Arabidopsis thaliana |
| AT5G50570:CDS:2.1 |
134
|
Chr5: 20583147-20583280 | Arabidopsis thaliana |
| AT5G50570:CDS:1.1 |
440
|
Chr5: 20583352-20583791 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G50565:exon:10 |
333
|
Chr5: 20581771-20582103 | Arabidopsis thaliana |
| AT5G50565:exon:9 |
892
|
Chr5: 20581221-20582112 | Arabidopsis thaliana |
| AT5G50565:exon:11 |
408
|
Chr5: 20581771-20582178 | Arabidopsis thaliana |
| AT5G50570:exon:2 |
1196
|
Chr5: 20583352-20584547 | Arabidopsis thaliana |
| AT5G50570:exon:5 |
978
|
Chr5: 20582083-20583060 | Arabidopsis thaliana |
| AT5G50570:exon:4 |
134
|
Chr5: 20583147-20583280 | Arabidopsis thaliana |
| AT5G50570:exon:3 |
470
|
Chr5: 20583352-20583821 | Arabidopsis thaliana |
| AT5G50570:exon:1 |
356
|
Chr5: 20584366-20584721 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G50570:five_prime_UTR:2 |
756
|
Chr5: 20583792-20584547 | Arabidopsis thaliana |
| AT5G50570:five_prime_UTR:3 |
30
|
Chr5: 20583792-20583821 | Arabidopsis thaliana |
| AT5G50570:five_prime_UTR:1 |
356
|
Chr5: 20584366-20584721 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G50565 | locus:2832390 | AT5G50565 |
2066
|
Chr5: 20580113-20582178 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL | ||
| AT5G50570 | locus:2159717 | SPL13A | SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A |
2639
|
Chr5: 20582083-20584721 | A. thaliana | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein;(source:Araport11) | Together with SPL13B involved in floral transition. Expression reduced by Verticillium dahliae SRNAs which affects the plant's miR157d which targets SPL13A and B. | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | SPL13, SPL13A |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G50565.1 |
996
|
Chr5: 20580113-20582103 |
| AT5G50565.4 |
1397
|
Chr5: 20580164-20582112 |
| AT5G50565.3 |
1687
|
Chr5: 20580164-20582112 |
| AT5G50565.6 |
913
|
Chr5: 20580199-20582178 |
| AT5G50565.5 |
1275
|
Chr5: 20580199-20582178 |
| AT5G50565.2 |
850
|
Chr5: 20580212-20582178 |
| AT5G50570.1 |
1938
|
Chr5: 20582083-20584721 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G50565:three_prime_UTR:2 |
277
|
Chr5: 20581827-20582103 | Arabidopsis thaliana |
| AT5G50565:three_prime_UTR:1 |
765
|
Chr5: 20581348-20582112 | Arabidopsis thaliana |
| AT5G50565:three_prime_UTR:3 |
352
|
Chr5: 20581827-20582178 | Arabidopsis thaliana |
| AT5G50570:three_prime_UTR:1 |
472
|
Chr5: 20582083-20582554 | Arabidopsis thaliana |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE74135 |
171
|
Chr5: 20582278-20582448 | Arabidopsis thaliana |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE74135:transposon_fragment:1 |
171
|
Chr5: 20582278-20582448 | Arabidopsis thaliana |
