Genomics
Gene models -
Gene models
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Overlapping Features
Genome features that overlap coordinates of this AntisenseLncRNA
Antisense lncRNAs: 3, CDSs: 10, Exons: 13, Genes: 3, mRNAs: 2, miRNAs: 2, miRNA Primary Transcript: 1
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26146.1 | 703 | Chr5: 9135913-9138264 |
AT5G26146.3 | 3548 | Chr5: 9135925-9139579 |
AT5G26146.4 | 3655 | Chr5: 9135925-9139579 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G26150:CDS:8 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:CDS:7 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:CDS:6 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:CDS:5 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:CDS:3 | 338 | Chr5: 9139317-9139654 | Arabidopsis thaliana |
AT5G26150:CDS:8.1 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:CDS:7.1 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:CDS:6.1 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:CDS:5.1 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:CDS:4 | 323 | Chr5: 9139317-9139639 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G26146:exon:1 | 90 | Chr5: 9135913-9136002 | Arabidopsis thaliana |
AT5G26146:exon:5 | 141 | Chr5: 9137545-9137685 | Arabidopsis thaliana |
AT5G26146:exon:6 | 472 | Chr5: 9137793-9138264 | Arabidopsis thaliana |
AT5G26146:exon:2 | 78 | Chr5: 9135925-9136002 | Arabidopsis thaliana |
AT5G26146:exon:3 | 1761 | Chr5: 9135925-9137685 | Arabidopsis thaliana |
AT5G26146:exon:7 | 1787 | Chr5: 9137793-9139579 | Arabidopsis thaliana |
AT5G26146:exon:4 | 3655 | Chr5: 9135925-9139579 | Arabidopsis thaliana |
AT5G26150:exon:4 | 338 | Chr5: 9139317-9139654 | Arabidopsis thaliana |
AT5G26150:exon:9 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:exon:8 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:exon:7 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:exon:6 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:exon:5 | 323 | Chr5: 9139317-9139639 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G26146 | locus:4515103614 | AT5G26146 | 3667 | Chr5: 9135913-9139579 | A. thaliana | Natural antisense transcript overlaps with AT5G26150;(source:Araport11) | NULL | other RNA | ||
AT5G26147 | locus:1009023478 | MIR156F | microRNA156F | 132 | Chr5: 9136106-9136237 | A. thaliana | microRNA ath-MIR156f precursor;(source:Araport11) | Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC. miR156 limits plastochron length in developing leaf primordia. | MIR156F; miRNA | MIR156F |
AT5G26150 | locus:2180677 | AT5G26150 | 2797 | Chr5: 9137461-9140257 | A. thaliana | protein kinase family protein;(source:Araport11) | NULL | protein kinase family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26150.2 | 2239 | Chr5: 9137461-9140211 |
AT5G26150.1 | 2270 | Chr5: 9137461-9140257 |
miRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
ath-miR156f-5p | 20 | Chr5: 9136126-9136145 |
ath-miR156f-3p | 21 | Chr5: 9136197-9136217 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26147.1 | 132 | Chr5: 9136106-9136237 |