External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Transcript | Exons | Introns | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
AT5G26146.1
AT5G26146.1
703 |
|
|
||||||||||
AT5G26146.2
AT5G26146.2
1865 |
|
|
||||||||||
AT5G26146.3
AT5G26146.3
3548 |
|
|
||||||||||
AT5G26146.4
AT5G26146.4
3655 |
|
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 4, CDSs: 10, Exons: 13, Genes: 2, mRNAs: 2, miRNAs: 2, miRNA Primary Transcript: 1
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26146.1 | 703 | Chr5: 9135913-9138264 |
AT5G26146.2 | 1865 | Chr5: 9135925-9139579 |
AT5G26146.3 | 3548 | Chr5: 9135925-9139579 |
AT5G26146.4 | 3655 | Chr5: 9135925-9139579 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G26150:CDS:8 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:CDS:7 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:CDS:6 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:CDS:5 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:CDS:3 | 338 | Chr5: 9139317-9139654 | Arabidopsis thaliana |
AT5G26150:CDS:8.1 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:CDS:7.1 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:CDS:6.1 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:CDS:5.1 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:CDS:4 | 323 | Chr5: 9139317-9139639 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G26146:exon:1 | 90 | Chr5: 9135913-9136002 | Arabidopsis thaliana |
AT5G26146:exon:5 | 141 | Chr5: 9137545-9137685 | Arabidopsis thaliana |
AT5G26146:exon:6 | 472 | Chr5: 9137793-9138264 | Arabidopsis thaliana |
AT5G26146:exon:2 | 78 | Chr5: 9135925-9136002 | Arabidopsis thaliana |
AT5G26146:exon:3 | 1761 | Chr5: 9135925-9137685 | Arabidopsis thaliana |
AT5G26146:exon:7 | 1787 | Chr5: 9137793-9139579 | Arabidopsis thaliana |
AT5G26146:exon:4 | 3655 | Chr5: 9135925-9139579 | Arabidopsis thaliana |
AT5G26150:exon:4 | 338 | Chr5: 9139317-9139654 | Arabidopsis thaliana |
AT5G26150:exon:9 | 717 | Chr5: 9137461-9138177 | Arabidopsis thaliana |
AT5G26150:exon:8 | 429 | Chr5: 9138253-9138681 | Arabidopsis thaliana |
AT5G26150:exon:7 | 102 | Chr5: 9138748-9138849 | Arabidopsis thaliana |
AT5G26150:exon:6 | 292 | Chr5: 9138939-9139230 | Arabidopsis thaliana |
AT5G26150:exon:5 | 323 | Chr5: 9139317-9139639 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G26147 | locus:1009023478 | MIR156F | microRNA156F | 132 | Chr5: 9136106-9136237 | A. thaliana | microRNA ath-MIR156f precursor;(source:Araport11) | Encodes a microRNA that targets several SPL family members, including SPL3,4, and 5. By regulating the expression of SPL3 (and probably also SPL4 and SPL5), this microRNA regulates vegetative phase change. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGACAGAAGAGAGUGAGCAC. miR156 limits plastochron length in developing leaf primordia. | MIR156F; miRNA | MIR156F |
AT5G26150 | locus:2180677 | AT5G26150 | 2797 | Chr5: 9137461-9140257 | A. thaliana | protein kinase family protein;(source:Araport11) | NULL | protein kinase family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26150.2 | 2239 | Chr5: 9137461-9140211 |
AT5G26150.1 | 2270 | Chr5: 9137461-9140257 |
miRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
ath-miR156f-5p | 20 | Chr5: 9136126-9136145 |
ath-miR156f-3p | 21 | Chr5: 9136197-9136217 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G26147.1 | 132 | Chr5: 9136106-9136237 |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...