Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
AT5G13890.1
AT5G13890.1
1576 |
|
|
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AT5G13890.3
AT5G13890.3
1554 |
|
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AT5G13890.2
AT5G13890.2
1162 |
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 3, Exons: 6, Five Prime UTRs: 3, Genes: 3, mRNAs: 3, miRNA: 1, miRNA Primary Transcript: 1, Three Prime UTRs: 5
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13890:CDS:1 | 933 | Chr5: 4479940-4480872 | Arabidopsis thaliana |
AT5G13890:CDS:1.1 | 933 | Chr5: 4479940-4480872 | Arabidopsis thaliana |
AT5G13890:CDS:1.2 | 933 | Chr5: 4479940-4480872 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13890:exon:5 | 386 | Chr5: 4478787-4479172 | Arabidopsis thaliana |
AT5G13890:exon:2 | 1190 | Chr5: 4479907-4481096 | Arabidopsis thaliana |
AT5G13890:exon:4 | 311 | Chr5: 4478843-4479153 | Arabidopsis thaliana |
AT5G13890:exon:1 | 1243 | Chr5: 4479907-4481149 | Arabidopsis thaliana |
AT5G13890:exon:3 | 1162 | Chr5: 4479767-4480928 | Arabidopsis thaliana |
AT5G13900:exon:2 | 355 | Chr5: 4481122-4481476 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13890:five_prime_UTR:2 | 224 | Chr5: 4480873-4481096 | Arabidopsis thaliana |
AT5G13890:five_prime_UTR:1 | 277 | Chr5: 4480873-4481149 | Arabidopsis thaliana |
AT5G13890:five_prime_UTR:3 | 181 | Chr5: 4480873-4481053 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G13890 | locus:2159043 | AT5G13890 | 2363 | Chr5: 4478787-4481149 | A. thaliana | plant viral-response family protein (DUF716);(source:Araport11) | NULL | Family of unknown function (DUF716) | ||
AT5G13887 | locus:4515103562 | MIR848A | microRNA848A | 195 | Chr5: 4479397-4479591 | A. thaliana | microRNA ath-MIR848 precursor;(source:Araport11) | Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UGACAUGGGACUGCCUAAGCUA | MIR848a; miRNA | MIR848A |
AT5G13900 | locus:2159053 | AT5G13900 | 829 | Chr5: 4481122-4481950 | A. thaliana | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein;(source:Araport11) | NULL | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | LTPG30 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G13890.1 | 1576 | Chr5: 4478787-4481096 |
AT5G13890.2 | 1162 | Chr5: 4479767-4481053 |
AT5G13900.1 | 754 | Chr5: 4481122-4481950 |
miRNA Primary Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G13887.1 | 195 | Chr5: 4479397-4479591 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13890:three_prime_UTR:4 | 386 | Chr5: 4478787-4479172 | Arabidopsis thaliana |
AT5G13890:three_prime_UTR:3 | 311 | Chr5: 4478843-4479153 | Arabidopsis thaliana |
AT5G13890:three_prime_UTR:1 | 33 | Chr5: 4479907-4479939 | Arabidopsis thaliana |
AT5G13890:three_prime_UTR:2 | 173 | Chr5: 4479767-4479939 | Arabidopsis thaliana |
AT5G13900:three_prime_UTR:1 | 224 | Chr5: 4481122-4481345 | Arabidopsis thaliana |