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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G03330:CDS:1 | 376 | Chr5: 807728-808103 | Arabidopsis thaliana |
AT5G03330:CDS:2 | 170 | Chr5: 808190-808359 | Arabidopsis thaliana |
AT5G03330:CDS:3 | 74 | Chr5: 808436-808509 | Arabidopsis thaliana |
AT5G03330:CDS:4 | 55 | Chr5: 808587-808641 | Arabidopsis thaliana |
AT5G03330:CDS:5 | 75 | Chr5: 808740-808814 | Arabidopsis thaliana |
AT5G03330:CDS:6 | 74 | Chr5: 808909-808982 | Arabidopsis thaliana |
AT5G03330:CDS:7 | 49 | Chr5: 809067-809115 | Arabidopsis thaliana |
AT5G03330:CDS:8 | 85 | Chr5: 809217-809301 | Arabidopsis thaliana |
AT5G03330:CDS:10 | 57 | Chr5: 809400-809456 | Arabidopsis thaliana |
AT5G03330:CDS:11 | 56 | Chr5: 809553-809608 | Arabidopsis thaliana |
AT5G03330:CDS:1.1 | 376 | Chr5: 807728-808103 | Arabidopsis thaliana |
AT5G03330:CDS:2.1 | 170 | Chr5: 808190-808359 | Arabidopsis thaliana |
AT5G03330:CDS:3.1 | 74 | Chr5: 808436-808509 | Arabidopsis thaliana |
AT5G03330:CDS:4.1 | 55 | Chr5: 808587-808641 | Arabidopsis thaliana |
AT5G03330:CDS:5.1 | 75 | Chr5: 808740-808814 | Arabidopsis thaliana |
AT5G03330:CDS:6.1 | 74 | Chr5: 808909-808982 | Arabidopsis thaliana |
AT5G03330:CDS:7.1 | 49 | Chr5: 809067-809115 | Arabidopsis thaliana |
AT5G03330:CDS:9 | 186 | Chr5: 809217-809402 | Arabidopsis thaliana |
AT5G03330:CDS:1.2 | 376 | Chr5: 807728-808103 | Arabidopsis thaliana |
AT5G03330:CDS:2.2 | 170 | Chr5: 808190-808359 | Arabidopsis thaliana |
AT5G03330:CDS:3.2 | 74 | Chr5: 808436-808509 | Arabidopsis thaliana |
AT5G03330:CDS:4.2 | 55 | Chr5: 808587-808641 | Arabidopsis thaliana |
AT5G03330:CDS:5.2 | 75 | Chr5: 808740-808814 | Arabidopsis thaliana |
AT5G03330:CDS:6.2 | 74 | Chr5: 808909-808982 | Arabidopsis thaliana |
AT5G03330:CDS:7.2 | 49 | Chr5: 809067-809115 | Arabidopsis thaliana |
AT5G03330:CDS:8.1 | 85 | Chr5: 809217-809301 | Arabidopsis thaliana |
AT5G03330:CDS:10.1 | 57 | Chr5: 809400-809456 | Arabidopsis thaliana |
AT5G03330:CDS:11.1 | 56 | Chr5: 809553-809608 | Arabidopsis thaliana |
AT5G03330:CDS:1.3 | 376 | Chr5: 807728-808103 | Arabidopsis thaliana |
AT5G03330:CDS:2.3 | 170 | Chr5: 808190-808359 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G03330:exon:1 | 276 | Chr5: 806964-807239 | Arabidopsis thaliana |
AT5G03330:exon:3 | 395 | Chr5: 807709-808103 | Arabidopsis thaliana |
AT5G03330:exon:14 | 849 | Chr5: 809553-810401 | Arabidopsis thaliana |
AT5G03330:exon:10 | 85 | Chr5: 809217-809301 | Arabidopsis thaliana |
AT5G03330:exon:12 | 57 | Chr5: 809400-809456 | Arabidopsis thaliana |
AT5G03330:exon:2 | 877 | Chr5: 807227-808103 | Arabidopsis thaliana |
AT5G03330:exon:4 | 170 | Chr5: 808190-808359 | Arabidopsis thaliana |
AT5G03330:exon:5 | 74 | Chr5: 808436-808509 | Arabidopsis thaliana |
AT5G03330:exon:6 | 55 | Chr5: 808587-808641 | Arabidopsis thaliana |
AT5G03330:exon:7 | 75 | Chr5: 808740-808814 | Arabidopsis thaliana |
AT5G03330:exon:8 | 74 | Chr5: 808909-808982 | Arabidopsis thaliana |
AT5G03330:exon:9 | 49 | Chr5: 809067-809115 | Arabidopsis thaliana |
AT5G03330:exon:11 | 240 | Chr5: 809217-809456 | Arabidopsis thaliana |
AT5G03330:exon:13 | 265 | Chr5: 809553-809817 | Arabidopsis thaliana |
AT5G03340:exon:5 | 570 | Chr5: 809830-810399 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G03330:five_prime_UTR:1 | 276 | Chr5: 806964-807239 | Arabidopsis thaliana |
AT5G03330:five_prime_UTR:3 | 19 | Chr5: 807709-807727 | Arabidopsis thaliana |
AT5G03330:five_prime_UTR:2 | 501 | Chr5: 807227-807727 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G03340 | locus:2831844 | AtCDC48C | cell division cycle 48C | 3464 | Chr5: 809830-813293 | A. thaliana | ATPase, AAA-type, CDC48 protein;(source:Araport11) | NULL | ATPase, AAA-type, CDC48 protein | AtCDC48C |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G03330.1 | 2159 | Chr5: 806964-810401 |
AT5G03330.3 | 2257 | Chr5: 806964-810401 |
AT5G03330.2 | 1781 | Chr5: 807227-809817 |
AT5G03330.4 | 1879 | Chr5: 807227-809817 |
AT5G03340.1 | 2854 | Chr5: 809830-813293 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G03330:three_prime_UTR:5 | 793 | Chr5: 809609-810401 | Arabidopsis thaliana |
AT5G03330:three_prime_UTR:3 | 849 | Chr5: 809553-810401 | Arabidopsis thaliana |
AT5G03330:three_prime_UTR:4 | 209 | Chr5: 809609-809817 | Arabidopsis thaliana |
AT5G03330:three_prime_UTR:1 | 54 | Chr5: 809403-809456 | Arabidopsis thaliana |
AT5G03330:three_prime_UTR:2 | 265 | Chr5: 809553-809817 | Arabidopsis thaliana |
AT5G03340:three_prime_UTR:1 | 261 | Chr5: 809830-810090 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
OTU10_ARATH-2 OTU10_ARATH | function | Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (Probable). Cysteine protease with a preference for 'Lys-63' over 'Lys-48' over 'Met-1' -linked ubiquitin (UB) tetramers as substrates (PubMed:24659992). Cleaves also RUB-GST fusion (PubMed:24659992). |
OTU10_ARATH-2 OTU10_ARATH A0A1P8BF55_ARATH | similarity | Belongs to the peptidase C85 family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
cysteine-type deubiquitinase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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