help  | faq  | software  | BAR

Gene : AT5G03330 A. thaliana

DB identifier  ? AT5G03330 Secondary Identifier  ? locus:2142659
Brief Description  Cysteine proteinases superfamily protein
TAIR Computational Description  Cysteine proteinases superfamily protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Cysteine proteinases superfamily protein

0 Gene Rifs

1 Organism

4 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3438  
Location: Chr5:806964-810401

Gene models - AT5G03330 AT5G03330

? Gene models

Transcripts: 4  Exons: 40  Introns: 36 

Overlapping Features

? Genome features that overlap coordinates of this Gene

18 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
OTU10_ARATH-2 OTU10_ARATH function Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (Probable). Cysteine protease with a preference for 'Lys-63' over 'Lys-48' over 'Met-1' -linked ubiquitin (UB) tetramers as substrates (PubMed:24659992). Cleaves also RUB-GST fusion (PubMed:24659992).
OTU10_ARATH-2 OTU10_ARATH A0A1P8BF55_ARATH similarity Belongs to the peptidase C85 family.

3 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
cysteine-type deubiquitinase activity  ? ECO  
biological process
No terms in this category.

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

5 Data Sets