Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00830:CDS:1 | 432 | Chr4: 352782-353213 | Arabidopsis thaliana |
AT4G00830:CDS:2 | 117 | Chr4: 353301-353417 | Arabidopsis thaliana |
AT4G00830:CDS:5 | 141 | Chr4: 353518-353658 | Arabidopsis thaliana |
AT4G00830:CDS:7 | 180 | Chr4: 353738-353917 | Arabidopsis thaliana |
AT4G00830:CDS:8 | 202 | Chr4: 354016-354217 | Arabidopsis thaliana |
AT4G00830:CDS:9 | 182 | Chr4: 354356-354537 | Arabidopsis thaliana |
AT4G00830:CDS:10 | 86 | Chr4: 354635-354720 | Arabidopsis thaliana |
AT4G00830:CDS:11 | 148 | Chr4: 354818-354965 | Arabidopsis thaliana |
AT4G00830:CDS:1.1 | 432 | Chr4: 352782-353213 | Arabidopsis thaliana |
AT4G00830:CDS:2.1 | 117 | Chr4: 353301-353417 | Arabidopsis thaliana |
AT4G00830:CDS:5.1 | 141 | Chr4: 353518-353658 | Arabidopsis thaliana |
AT4G00830:CDS:7.1 | 180 | Chr4: 353738-353917 | Arabidopsis thaliana |
AT4G00830:CDS:8.1 | 202 | Chr4: 354016-354217 | Arabidopsis thaliana |
AT4G00830:CDS:9.1 | 182 | Chr4: 354356-354537 | Arabidopsis thaliana |
AT4G00830:CDS:10.1 | 86 | Chr4: 354635-354720 | Arabidopsis thaliana |
AT4G00830:CDS:11.1 | 148 | Chr4: 354818-354965 | Arabidopsis thaliana |
AT4G00830:CDS:1.2 | 432 | Chr4: 352782-353213 | Arabidopsis thaliana |
AT4G00830:CDS:2.2 | 117 | Chr4: 353301-353417 | Arabidopsis thaliana |
AT4G00830:CDS:4 | 117 | Chr4: 353518-353634 | Arabidopsis thaliana |
AT4G00830:CDS:7.2 | 180 | Chr4: 353738-353917 | Arabidopsis thaliana |
AT4G00830:CDS:8.2 | 202 | Chr4: 354016-354217 | Arabidopsis thaliana |
AT4G00830:CDS:9.2 | 182 | Chr4: 354356-354537 | Arabidopsis thaliana |
AT4G00830:CDS:10.2 | 86 | Chr4: 354635-354720 | Arabidopsis thaliana |
AT4G00830:CDS:11.2 | 148 | Chr4: 354818-354965 | Arabidopsis thaliana |
AT4G00830:CDS:1.3 | 432 | Chr4: 352782-353213 | Arabidopsis thaliana |
AT4G00830:CDS:3 | 153 | Chr4: 353301-353453 | Arabidopsis thaliana |
AT4G00830:CDS:6 | 105 | Chr4: 353554-353658 | Arabidopsis thaliana |
AT4G00830:CDS:7.3 | 180 | Chr4: 353738-353917 | Arabidopsis thaliana |
AT4G00830:CDS:8.3 | 202 | Chr4: 354016-354217 | Arabidopsis thaliana |
AT4G00830:CDS:9.3 | 182 | Chr4: 354356-354537 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00830:exon:1 | 228 | Chr4: 351969-352196 | Arabidopsis thaliana |
AT4G00830:exon:19 | 431 | Chr4: 354818-355248 | Arabidopsis thaliana |
AT4G00830:exon:2 | 407 | Chr4: 351973-352379 | Arabidopsis thaliana |
AT4G00830:exon:18 | 418 | Chr4: 354818-355235 | Arabidopsis thaliana |
AT4G00830:exon:3 | 223 | Chr4: 351974-352196 | Arabidopsis thaliana |
AT4G00830:exon:4 | 406 | Chr4: 351974-352379 | Arabidopsis thaliana |
AT4G00830:exon:9 | 153 | Chr4: 353301-353453 | Arabidopsis thaliana |
AT4G00830:exon:12 | 105 | Chr4: 353554-353658 | Arabidopsis thaliana |
AT4G00830:exon:5 | 392 | Chr4: 352016-352407 | Arabidopsis thaliana |
AT4G00830:exon:7 | 432 | Chr4: 352782-353213 | Arabidopsis thaliana |
AT4G00830:exon:10 | 117 | Chr4: 353518-353634 | Arabidopsis thaliana |
AT4G00830:exon:6 | 462 | Chr4: 352752-353213 | Arabidopsis thaliana |
AT4G00830:exon:8 | 117 | Chr4: 353301-353417 | Arabidopsis thaliana |
AT4G00830:exon:11 | 141 | Chr4: 353518-353658 | Arabidopsis thaliana |
AT4G00830:exon:13 | 180 | Chr4: 353738-353917 | Arabidopsis thaliana |
AT4G00830:exon:14 | 202 | Chr4: 354016-354217 | Arabidopsis thaliana |
AT4G00830:exon:15 | 182 | Chr4: 354356-354537 | Arabidopsis thaliana |
AT4G00830:exon:16 | 86 | Chr4: 354635-354720 | Arabidopsis thaliana |
AT4G00830:exon:17 | 413 | Chr4: 354818-355230 | Arabidopsis thaliana |
AT4G00840:exon:8 | 389 | Chr4: 355211-355599 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00830:five_prime_UTR:1 | 228 | Chr4: 351969-352196 | Arabidopsis thaliana |
AT4G00830:five_prime_UTR:2 | 407 | Chr4: 351973-352379 | Arabidopsis thaliana |
AT4G00830:five_prime_UTR:3 | 223 | Chr4: 351974-352196 | Arabidopsis thaliana |
AT4G00830:five_prime_UTR:4 | 406 | Chr4: 351974-352379 | Arabidopsis thaliana |
AT4G00830:five_prime_UTR:5 | 392 | Chr4: 352016-352407 | Arabidopsis thaliana |
AT4G00830:five_prime_UTR:6 | 30 | Chr4: 352752-352781 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G00830 | locus:2134638 | LIF2 | LHP1-Interacting Factor 2 | 3280 | Chr4: 351969-355248 | A. thaliana | RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11) | Encodes a heterogeneous nuclear ribonucleoprotein (hnRNP-Q) that is involved in the plant innate immune response and may function as a suppressor of cell-autonomous immunity. | RNA-binding (RRM/RBD/RNP motifs) family protein | LIF2 |
AT4G00840 | locus:2134643 | AT4G00840 | 2086 | Chr4: 355211-357296 | A. thaliana | DHHC-type zinc finger family protein;(source:Araport11) | NULL | DHHC-type zinc finger family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G00830.1 | 1999 | Chr4: 351969-355248 |
AT4G00830.2 | 2165 | Chr4: 351973-355235 |
AT4G00830.3 | 1952 | Chr4: 351974-355230 |
AT4G00830.5 | 2121 | Chr4: 352016-355230 |
AT4G00830.6 | 1783 | Chr4: 352752-355230 |
AT4G00840.1 | 1339 | Chr4: 355211-357296 |
AT4G00840.2 | 1359 | Chr4: 355211-357296 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00830:three_prime_UTR:3 | 283 | Chr4: 354966-355248 | Arabidopsis thaliana |
AT4G00830:three_prime_UTR:2 | 270 | Chr4: 354966-355235 | Arabidopsis thaliana |
AT4G00830:three_prime_UTR:1 | 265 | Chr4: 354966-355230 | Arabidopsis thaliana |
AT4G00840:three_prime_UTR:4 | 272 | Chr4: 355211-355482 | Arabidopsis thaliana |
AT4G00840:three_prime_UTR:3 | 389 | Chr4: 355211-355599 | Arabidopsis thaliana |