Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 15, Exons: 11, Five Prime UTRs: 4, Genes: 3, mRNAs: 3, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55520:CDS:1 | 109 | Chr3: 20594177-20594285 | Arabidopsis thaliana |
AT3G55520:CDS:2 | 134 | Chr3: 20594402-20594535 | Arabidopsis thaliana |
AT3G55520:CDS:3 | 80 | Chr3: 20594621-20594700 | Arabidopsis thaliana |
AT3G55520:CDS:4 | 93 | Chr3: 20594792-20594884 | Arabidopsis thaliana |
AT3G55520:CDS:5 | 157 | Chr3: 20594972-20595128 | Arabidopsis thaliana |
AT3G55520:CDS:1.1 | 109 | Chr3: 20594177-20594285 | Arabidopsis thaliana |
AT3G55520:CDS:2.1 | 134 | Chr3: 20594402-20594535 | Arabidopsis thaliana |
AT3G55520:CDS:3.1 | 80 | Chr3: 20594621-20594700 | Arabidopsis thaliana |
AT3G55520:CDS:4.1 | 93 | Chr3: 20594792-20594884 | Arabidopsis thaliana |
AT3G55520:CDS:5.1 | 157 | Chr3: 20594972-20595128 | Arabidopsis thaliana |
AT3G55520:CDS:1.2 | 109 | Chr3: 20594177-20594285 | Arabidopsis thaliana |
AT3G55520:CDS:2.2 | 134 | Chr3: 20594402-20594535 | Arabidopsis thaliana |
AT3G55520:CDS:3.2 | 80 | Chr3: 20594621-20594700 | Arabidopsis thaliana |
AT3G55520:CDS:4.2 | 93 | Chr3: 20594792-20594884 | Arabidopsis thaliana |
AT3G55520:CDS:5.2 | 157 | Chr3: 20594972-20595128 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55520:exon:2 | 398 | Chr3: 20593661-20594058 | Arabidopsis thaliana |
AT3G55520:exon:3 | 335 | Chr3: 20593951-20594285 | Arabidopsis thaliana |
AT3G55520:exon:8 | 157 | Chr3: 20594972-20595128 | Arabidopsis thaliana |
AT3G55520:exon:1 | 205 | Chr3: 20593661-20593865 | Arabidopsis thaliana |
AT3G55520:exon:4 | 131 | Chr3: 20594155-20594285 | Arabidopsis thaliana |
AT3G55520:exon:5 | 134 | Chr3: 20594402-20594535 | Arabidopsis thaliana |
AT3G55520:exon:6 | 80 | Chr3: 20594621-20594700 | Arabidopsis thaliana |
AT3G55520:exon:7 | 93 | Chr3: 20594792-20594884 | Arabidopsis thaliana |
AT3G55520:exon:9 | 374 | Chr3: 20594972-20595345 | Arabidopsis thaliana |
AT3G08515:exon:1 | 332 | Chr3: 20593845-20594176 | Arabidopsis thaliana |
AT3G55530:exon:9 | 300 | Chr3: 20595126-20595425 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55520:five_prime_UTR:2 | 398 | Chr3: 20593661-20594058 | Arabidopsis thaliana |
AT3G55520:five_prime_UTR:3 | 226 | Chr3: 20593951-20594176 | Arabidopsis thaliana |
AT3G55520:five_prime_UTR:1 | 205 | Chr3: 20593661-20593865 | Arabidopsis thaliana |
AT3G55520:five_prime_UTR:4 | 22 | Chr3: 20594155-20594176 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G55520 | locus:2100016 | AT3G55520 | 1685 | Chr3: 20593661-20595345 | A. thaliana | FKBP-like peptidyl-prolyl cis-trans isomerase family protein;(source:Araport11) | NULL | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | ||
AT3G08515 | AT3G08515 | 332 | Chr3: 20593845-20594176 | A. thaliana | Natural antisense transcript overlaps with AT3G55520;(source:Araport11) | NULL | ||||
AT3G55530 | locus:2100021 | SDIR1 | SALT- AND DROUGHT-INDUCED RING FINGER1 | 2478 | Chr3: 20595126-20597603 | A. thaliana | RING/U-box superfamily protein;(source:Araport11) | Encodes an intracellular membrane localized protein with E3 ligase activity, found in the ER with the C-terminus facing the cytoplasm. It is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. | RING/U-box superfamily protein | AtSDIR1, SDIR1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G55520.3 | 993 | Chr3: 20593661-20595128 |
AT3G55520.1 | 1017 | Chr3: 20593661-20595345 |
AT3G55530.1 | 1164 | Chr3: 20595126-20597603 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55530:three_prime_UTR:1 | 174 | Chr3: 20595126-20595299 | Arabidopsis thaliana |