Genomics
Overlapping Features
Genome features that overlap coordinates of this Exon
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11240:CDS:8 | 117 | Chr3: 3518665-3518781 | Arabidopsis thaliana |
AT3G11240:CDS:8.1 | 117 | Chr3: 3518665-3518781 | Arabidopsis thaliana |
AT3G11240:CDS:8.2 | 117 | Chr3: 3518665-3518781 | Arabidopsis thaliana |
AT3G11240:CDS:8.3 | 117 | Chr3: 3518665-3518781 | Arabidopsis thaliana |
AT3G11240:CDS:8.4 | 117 | Chr3: 3518665-3518781 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11230:exon:11 | 369 | Chr3: 3518109-3518477 | Arabidopsis thaliana |
AT3G11230:exon:9 | 510 | Chr3: 3517968-3518477 | Arabidopsis thaliana |
AT3G11240:exon:11 | 299 | Chr3: 3518483-3518781 | Arabidopsis thaliana |
AT3G11240:exon:10 | 298 | Chr3: 3518484-3518781 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G11230 | locus:2074708 | AT3G11230 | 1915 | Chr3: 3516563-3518477 | A. thaliana | Yippee family putative zinc-binding protein;(source:Araport11) | NULL | Yippee family putative zinc-binding protein | ||
AT3G11240 | locus:2074718 | ATE2 | arginine-tRNA protein transferase 2 | 2717 | Chr3: 3518472-3521188 | A. thaliana | arginine-tRNA protein transferase 2;(source:Araport11) | Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. ATE2 has also been show to be involved in the response to pathogens. | arginine-tRNA protein transferase 2 | ATATE2, ATE2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G11230.1 | 800 | Chr3: 3516570-3518477 |
AT3G11230.4 | 885 | Chr3: 3516570-3518477 |
AT3G11240.2 | 2314 | Chr3: 3518472-3521130 |
AT3G11240.1 | 2096 | Chr3: 3518483-3521188 |
AT3G11240.3 | 2235 | Chr3: 3518483-3521188 |
AT3G11240.4 | 2222 | Chr3: 3518483-3521188 |
AT3G11240.5 | 1697 | Chr3: 3518484-3520352 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G11230:three_prime_UTR:4 | 284 | Chr3: 3518194-3518477 | Arabidopsis thaliana |
AT3G11230:three_prime_UTR:2 | 438 | Chr3: 3518040-3518477 | Arabidopsis thaliana |
AT3G11240:three_prime_UTR:3 | 193 | Chr3: 3518472-3518664 | Arabidopsis thaliana |
AT3G11240:three_prime_UTR:2 | 182 | Chr3: 3518483-3518664 | Arabidopsis thaliana |
AT3G11240:three_prime_UTR:1 | 181 | Chr3: 3518484-3518664 | Arabidopsis thaliana |