Genomics
Genome feature
| Region: |
mRNA
|
Length: |
2039
 |
| Location: | Chr2:19232607-19235179 | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT2G46790:CDS:1 |
187
|
Chr2: 19232874-19233060 | Arabidopsis thaliana |
| AT2G46790:CDS:2 |
162
|
Chr2: 19233161-19233322 | Arabidopsis thaliana |
| AT2G46790:CDS:3 |
131
|
Chr2: 19233420-19233550 | Arabidopsis thaliana |
| AT2G46790:CDS:6 |
120
|
Chr2: 19233638-19233757 | Arabidopsis thaliana |
| AT2G46790:CDS:7 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:CDS:9 |
463
|
Chr2: 19234274-19234736 | Arabidopsis thaliana |
| AT2G46790:CDS:5 |
129
|
Chr2: 19233629-19233757 | Arabidopsis thaliana |
| AT2G46790:CDS:7.1 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:CDS:8 |
436
|
Chr2: 19234274-19234709 | Arabidopsis thaliana |
| AT2G46790:CDS:10 |
99
|
Chr2: 19234803-19234901 | Arabidopsis thaliana |
| AT2G46790:CDS:1.1 |
187
|
Chr2: 19232874-19233060 | Arabidopsis thaliana |
| AT2G46790:CDS:2.1 |
162
|
Chr2: 19233161-19233322 | Arabidopsis thaliana |
| AT2G46790:CDS:3.1 |
131
|
Chr2: 19233420-19233550 | Arabidopsis thaliana |
| AT2G46790:CDS:6.1 |
120
|
Chr2: 19233638-19233757 | Arabidopsis thaliana |
| AT2G46790:CDS:7.2 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:CDS:8.1 |
436
|
Chr2: 19234274-19234709 | Arabidopsis thaliana |
| AT2G46790:CDS:10.1 |
99
|
Chr2: 19234803-19234901 | Arabidopsis thaliana |
| AT2G46790:CDS:4 |
129
|
Chr2: 19233422-19233550 | Arabidopsis thaliana |
| AT2G46790:CDS:6.2 |
120
|
Chr2: 19233638-19233757 | Arabidopsis thaliana |
| AT2G46790:CDS:7.3 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:CDS:8.2 |
436
|
Chr2: 19234274-19234709 | Arabidopsis thaliana |
| AT2G46790:CDS:10.2 |
99
|
Chr2: 19234803-19234901 | Arabidopsis thaliana |
| AT2G46790:CDS:5.1 |
129
|
Chr2: 19233629-19233757 | Arabidopsis thaliana |
| AT2G46790:CDS:7.4 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:CDS:8.3 |
436
|
Chr2: 19234274-19234709 | Arabidopsis thaliana |
| AT2G46790:CDS:10.3 |
99
|
Chr2: 19234803-19234901 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT2G46790:exon:11 |
906
|
Chr2: 19234274-19235179 | Arabidopsis thaliana |
| AT2G46790:exon:1 |
454
|
Chr2: 19232607-19233060 | Arabidopsis thaliana |
| AT2G46790:exon:4 |
162
|
Chr2: 19233161-19233322 | Arabidopsis thaliana |
| AT2G46790:exon:14 |
377
|
Chr2: 19234803-19235179 | Arabidopsis thaliana |
| AT2G46790:exon:2 |
418
|
Chr2: 19232643-19233060 | Arabidopsis thaliana |
| AT2G46790:exon:6 |
131
|
Chr2: 19233420-19233550 | Arabidopsis thaliana |
| AT2G46790:exon:8 |
120
|
Chr2: 19233638-19233757 | Arabidopsis thaliana |
| AT2G46790:exon:13 |
315
|
Chr2: 19234803-19235117 | Arabidopsis thaliana |
| AT2G46790:exon:3 |
412
|
Chr2: 19232649-19233060 | Arabidopsis thaliana |
| AT2G46790:exon:5 |
170
|
Chr2: 19233161-19233330 | Arabidopsis thaliana |
| AT2G46790:exon:7 |
338
|
Chr2: 19233420-19233757 | Arabidopsis thaliana |
| AT2G46790:exon:9 |
272
|
Chr2: 19233918-19234189 | Arabidopsis thaliana |
| AT2G46790:exon:10 |
436
|
Chr2: 19234274-19234709 | Arabidopsis thaliana |
| AT2G46790:exon:12 |
310
|
Chr2: 19234803-19235112 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT2G46790:five_prime_UTR:2 |
454
|
Chr2: 19232607-19233060 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:5 |
162
|
Chr2: 19233161-19233322 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:1 |
267
|
Chr2: 19232607-19232873 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:3 |
418
|
Chr2: 19232643-19233060 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:7 |
2
|
Chr2: 19233420-19233421 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:4 |
412
|
Chr2: 19232649-19233060 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:6 |
170
|
Chr2: 19233161-19233330 | Arabidopsis thaliana |
| AT2G46790:five_prime_UTR:8 |
209
|
Chr2: 19233420-19233628 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT2G46790 | locus:2044376 | PRR9 | pseudo-response regulator 9 |
2573
|
Chr2: 19232607-19235179 | A. thaliana | pseudo-response regulator 9;(source:Araport11) | Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY. Acts additively with EC, PRR5 and PRR7 to regulate hypocotyl growth under photoperiodic conditions. | pseudo-response regulator 9 | APRR9, PRR9, TL1 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT2G46790.3 |
2045
|
Chr2: 19232607-19235179 |
| AT2G46790.1 |
1952
|
Chr2: 19232607-19235179 |
| AT2G46790.2 |
1862
|
Chr2: 19232643-19235117 |
| AT2G46790.5 |
1938
|
Chr2: 19232649-19235112 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT2G46790:three_prime_UTR:1 |
443
|
Chr2: 19234737-19235179 | Arabidopsis thaliana |
| AT2G46790:three_prime_UTR:4 |
278
|
Chr2: 19234902-19235179 | Arabidopsis thaliana |
| AT2G46790:three_prime_UTR:3 |
216
|
Chr2: 19234902-19235117 | Arabidopsis thaliana |
| AT2G46790:three_prime_UTR:2 |
211
|
Chr2: 19234902-19235112 | Arabidopsis thaliana |
