Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 13, Exons: 15, Five Prime UTR: 1, Genes: 2, mRNAs: 2, Three Prime UTRs: 2, Transposable Element Gene: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:CDS:1 | 85 | Chr2: 13427060-13427144 | Arabidopsis thaliana |
AT2G31530:CDS:2 | 498 | Chr2: 13427439-13427936 | Arabidopsis thaliana |
AT2G31530:CDS:3 | 89 | Chr2: 13428027-13428115 | Arabidopsis thaliana |
AT2G31530:CDS:4 | 80 | Chr2: 13428213-13428292 | Arabidopsis thaliana |
AT2G31530:CDS:5 | 90 | Chr2: 13428422-13428511 | Arabidopsis thaliana |
AT2G31530:CDS:6 | 92 | Chr2: 13428620-13428711 | Arabidopsis thaliana |
AT2G31530:CDS:7 | 84 | Chr2: 13428822-13428905 | Arabidopsis thaliana |
AT2G31530:CDS:8 | 142 | Chr2: 13429058-13429199 | Arabidopsis thaliana |
AT2G31530:CDS:9 | 117 | Chr2: 13429361-13429477 | Arabidopsis thaliana |
AT2G31530:CDS:10 | 130 | Chr2: 13429592-13429721 | Arabidopsis thaliana |
AT2G31530:CDS:11 | 124 | Chr2: 13429818-13429941 | Arabidopsis thaliana |
AT2G31530:CDS:12 | 107 | Chr2: 13430027-13430133 | Arabidopsis thaliana |
AT2G31530:CDS:13 | 90 | Chr2: 13430219-13430308 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31520:exon:1 | 5150 | Chr2: 13421940-13427089 | Arabidopsis thaliana |
AT2G31530:exon:1 | 134 | Chr2: 13427011-13427144 | Arabidopsis thaliana |
AT2G31530:exon:2 | 498 | Chr2: 13427439-13427936 | Arabidopsis thaliana |
AT2G31530:exon:3 | 89 | Chr2: 13428027-13428115 | Arabidopsis thaliana |
AT2G31530:exon:4 | 80 | Chr2: 13428213-13428292 | Arabidopsis thaliana |
AT2G31530:exon:5 | 90 | Chr2: 13428422-13428511 | Arabidopsis thaliana |
AT2G31530:exon:6 | 92 | Chr2: 13428620-13428711 | Arabidopsis thaliana |
AT2G31530:exon:7 | 84 | Chr2: 13428822-13428905 | Arabidopsis thaliana |
AT2G31530:exon:8 | 142 | Chr2: 13429058-13429199 | Arabidopsis thaliana |
AT2G31530:exon:9 | 117 | Chr2: 13429361-13429477 | Arabidopsis thaliana |
AT2G31530:exon:10 | 130 | Chr2: 13429592-13429721 | Arabidopsis thaliana |
AT2G31530:exon:11 | 124 | Chr2: 13429818-13429941 | Arabidopsis thaliana |
AT2G31530:exon:12 | 107 | Chr2: 13430027-13430133 | Arabidopsis thaliana |
AT2G31530:exon:13 | 414 | Chr2: 13430219-13430632 | Arabidopsis thaliana |
AT2G31540:exon:3 | 458 | Chr2: 13430469-13430926 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:five_prime_UTR:1 | 49 | Chr2: 13427011-13427059 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G31530 | locus:2065868 | SCY2 | SECY HOMOLOG 2 | 3622 | Chr2: 13427011-13430632 | A. thaliana | SecY protein transport family protein;(source:Araport11) | Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. | SecY protein transport family protein | EMB2289, SCY2 |
AT2G31540 | locus:2065883 | AT2G31540 | 1597 | Chr2: 13430469-13432065 | A. thaliana | GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11) | GDSL-motif esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. | GDSL-like Lipase/Acylhydrolase superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G31520.1 | 5150 | Chr2: 13421940-13427089 |
AT2G31540.1 | 1367 | Chr2: 13430469-13432065 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:three_prime_UTR:1 | 324 | Chr2: 13430309-13430632 | Arabidopsis thaliana |
AT2G31540:three_prime_UTR:1 | 264 | Chr2: 13430469-13430732 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G31520 | locus:2065853 | AT2G31520 | 5150 | Chr2: 13421940-13427089 | A. thaliana | transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10) | NULL | transposable element gene |