Genomics
Transcript | Exons | Introns | ||
---|---|---|---|---|
AT2G31520.1
AT2G31520.1
5150 |
|
Overlapping Features
Genome features that overlap coordinates of this Exon
CDS: 1, Exon: 1, Five Prime UTR: 1, Gene: 1, mRNAs: 2, Transposable Elements: 3, Transposable Element Gene: 1, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:CDS:1 | 85 | Chr2: 13427060-13427144 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:exon:1 | 134 | Chr2: 13427011-13427144 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G31530:five_prime_UTR:1 | 49 | Chr2: 13427011-13427059 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G31530 | locus:2065868 | SCY2 | SECY HOMOLOG 2 | 3622 | Chr2: 13427011-13430632 | A. thaliana | SecY protein transport family protein;(source:Araport11) | Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. | SecY protein transport family protein | EMB2289, SCY2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G31520.1 | 5150 | Chr2: 13421940-13427089 |
AT2G31530.1 | 2101 | Chr2: 13427011-13430632 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE58955 | 374 | Chr2: 13421908-13422281 | Arabidopsis thaliana |
AT2TE58960 | 114 | Chr2: 13423288-13423401 | Arabidopsis thaliana |
AT2TE58965 | 1314 | Chr2: 13423408-13424721 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G31520 | locus:2065853 | AT2G31520 | 5150 | Chr2: 13421940-13427089 | A. thaliana | transposable_element_gene;(source:Araport11);non-LTR retrotransposon family (LINE), has a 9.9e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2TE58955:transposon_fragment:1 | 374 | Chr2: 13421908-13422281 | Arabidopsis thaliana |
AT2TE58960:transposon_fragment:1 | 114 | Chr2: 13423288-13423401 | Arabidopsis thaliana |
AT2TE58965:transposon_fragment:1 | 1314 | Chr2: 13423408-13424721 | Arabidopsis thaliana |