Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79350:CDS:31 | 32 | Chr1: 29844829-29844860 | Arabidopsis thaliana |
AT1G79350:CDS:30 | 112 | Chr1: 29844972-29845083 | Arabidopsis thaliana |
AT1G79350:CDS:29 | 129 | Chr1: 29845167-29845295 | Arabidopsis thaliana |
AT1G79350:CDS:28 | 103 | Chr1: 29845465-29845567 | Arabidopsis thaliana |
AT1G79350:CDS:27 | 54 | Chr1: 29845653-29845706 | Arabidopsis thaliana |
AT1G79350:CDS:26 | 119 | Chr1: 29845821-29845939 | Arabidopsis thaliana |
AT1G79350:CDS:25 | 78 | Chr1: 29846019-29846096 | Arabidopsis thaliana |
AT1G79350:CDS:24 | 124 | Chr1: 29846166-29846289 | Arabidopsis thaliana |
AT1G79350:CDS:23 | 112 | Chr1: 29846389-29846500 | Arabidopsis thaliana |
AT1G79350:CDS:22 | 121 | Chr1: 29846594-29846714 | Arabidopsis thaliana |
AT1G79350:CDS:21 | 101 | Chr1: 29846825-29846925 | Arabidopsis thaliana |
AT1G79350:CDS:20 | 92 | Chr1: 29847028-29847119 | Arabidopsis thaliana |
AT1G79350:CDS:19 | 107 | Chr1: 29847213-29847319 | Arabidopsis thaliana |
AT1G79350:CDS:18 | 136 | Chr1: 29847486-29847621 | Arabidopsis thaliana |
AT1G79350:CDS:17 | 98 | Chr1: 29847699-29847796 | Arabidopsis thaliana |
AT1G79350:CDS:16 | 94 | Chr1: 29848014-29848107 | Arabidopsis thaliana |
AT1G79350:CDS:15 | 173 | Chr1: 29848199-29848371 | Arabidopsis thaliana |
AT1G79350:CDS:14 | 71 | Chr1: 29848452-29848522 | Arabidopsis thaliana |
AT1G79350:CDS:13 | 132 | Chr1: 29848893-29849024 | Arabidopsis thaliana |
AT1G79350:CDS:12 | 100 | Chr1: 29849114-29849213 | Arabidopsis thaliana |
AT1G79350:CDS:11 | 144 | Chr1: 29849325-29849468 | Arabidopsis thaliana |
AT1G79350:CDS:10 | 129 | Chr1: 29849551-29849679 | Arabidopsis thaliana |
AT1G79350:CDS:9 | 82 | Chr1: 29849998-29850079 | Arabidopsis thaliana |
AT1G79350:CDS:8 | 61 | Chr1: 29850156-29850216 | Arabidopsis thaliana |
AT1G79350:CDS:7 | 133 | Chr1: 29850487-29850619 | Arabidopsis thaliana |
AT1G79350:CDS:6 | 78 | Chr1: 29850831-29850908 | Arabidopsis thaliana |
AT1G79350:CDS:5 | 182 | Chr1: 29851099-29851280 | Arabidopsis thaliana |
AT1G79350:CDS:4 | 77 | Chr1: 29851870-29851946 | Arabidopsis thaliana |
AT1G79350:CDS:3 | 131 | Chr1: 29852140-29852270 | Arabidopsis thaliana |
AT1G79350:CDS:2 | 174 | Chr1: 29852356-29852529 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:exon:2 | 1181 | Chr1: 29843458-29844638 | Arabidopsis thaliana |
AT1G79350:exon:31 | 240 | Chr1: 29844621-29844860 | Arabidopsis thaliana |
AT1G79350:exon:30 | 112 | Chr1: 29844972-29845083 | Arabidopsis thaliana |
AT1G79350:exon:29 | 129 | Chr1: 29845167-29845295 | Arabidopsis thaliana |
AT1G79350:exon:28 | 103 | Chr1: 29845465-29845567 | Arabidopsis thaliana |
AT1G79350:exon:27 | 54 | Chr1: 29845653-29845706 | Arabidopsis thaliana |
AT1G79350:exon:26 | 119 | Chr1: 29845821-29845939 | Arabidopsis thaliana |
AT1G79350:exon:25 | 78 | Chr1: 29846019-29846096 | Arabidopsis thaliana |
AT1G79350:exon:24 | 124 | Chr1: 29846166-29846289 | Arabidopsis thaliana |
AT1G79350:exon:23 | 112 | Chr1: 29846389-29846500 | Arabidopsis thaliana |
AT1G79350:exon:22 | 121 | Chr1: 29846594-29846714 | Arabidopsis thaliana |
AT1G79350:exon:21 | 101 | Chr1: 29846825-29846925 | Arabidopsis thaliana |
AT1G79350:exon:20 | 92 | Chr1: 29847028-29847119 | Arabidopsis thaliana |
AT1G79350:exon:19 | 107 | Chr1: 29847213-29847319 | Arabidopsis thaliana |
AT1G79350:exon:18 | 136 | Chr1: 29847486-29847621 | Arabidopsis thaliana |
AT1G79350:exon:17 | 98 | Chr1: 29847699-29847796 | Arabidopsis thaliana |
AT1G79350:exon:16 | 94 | Chr1: 29848014-29848107 | Arabidopsis thaliana |
AT1G79350:exon:15 | 173 | Chr1: 29848199-29848371 | Arabidopsis thaliana |
AT1G79350:exon:14 | 71 | Chr1: 29848452-29848522 | Arabidopsis thaliana |
AT1G79350:exon:13 | 132 | Chr1: 29848893-29849024 | Arabidopsis thaliana |
AT1G79350:exon:12 | 100 | Chr1: 29849114-29849213 | Arabidopsis thaliana |
AT1G79350:exon:11 | 144 | Chr1: 29849325-29849468 | Arabidopsis thaliana |
AT1G79350:exon:10 | 129 | Chr1: 29849551-29849679 | Arabidopsis thaliana |
AT1G79350:exon:9 | 82 | Chr1: 29849998-29850079 | Arabidopsis thaliana |
AT1G79350:exon:8 | 61 | Chr1: 29850156-29850216 | Arabidopsis thaliana |
AT1G79350:exon:7 | 133 | Chr1: 29850487-29850619 | Arabidopsis thaliana |
AT1G79350:exon:6 | 78 | Chr1: 29850831-29850908 | Arabidopsis thaliana |
AT1G79350:exon:5 | 182 | Chr1: 29851099-29851280 | Arabidopsis thaliana |
AT1G79350:exon:4 | 77 | Chr1: 29851870-29851946 | Arabidopsis thaliana |
AT1G79350:exon:3 | 131 | Chr1: 29852140-29852270 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79350:five_prime_UTR:1 | 251 | Chr1: 29853216-29853466 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G79340 | locus:2207350 | MC4 | metacaspase 4 | 2052 | Chr1: 29842587-29844638 | A. thaliana | metacaspase 4;(source:Araport11) | Encodes MCP2d, the predominant and constitutively expressed member of type II metacaspases (MCPs). MCP2d plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death (PCD). Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a�f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200. The mRNA is cell-to-cell mobile. | metacaspase 4 | AtMC4, AtMCP2d, MC4, MCA4, MCP2d |
AT1G79350 | locus:2207365 | EMB1135 | embryo defective 1135 | 8846 | Chr1: 29844621-29853466 | A. thaliana | RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11) | Encodes the Arabidopsis thaliana orthologue of metazoan Strawberry notch, a highly conserved co-activator of the developmental regulator Notch. It mediates stress-induced chromatin memory by modulating nucleosome occupancy by interacting with chromatin remodeling proteins of the ISWI and SWI/SNF classes. | RING/FYVE/PHD zinc finger superfamily protein | EMB1135, FGT1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:three_prime_UTR:1 | 270 | Chr1: 29844369-29844638 | Arabidopsis thaliana |
AT1G79350:three_prime_UTR:1 | 208 | Chr1: 29844621-29844828 | Arabidopsis thaliana |