Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
MC4
AT1G79340.1
1789 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:CDS:1 | 346 | Chr1: 29842849-29843194 | Arabidopsis thaliana |
AT1G79340:CDS:2 | 911 | Chr1: 29843458-29844368 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:exon:1 | 608 | Chr1: 29842587-29843194 | Arabidopsis thaliana |
AT1G79340:exon:2 | 1181 | Chr1: 29843458-29844638 | Arabidopsis thaliana |
AT1G79350:exon:31 | 240 | Chr1: 29844621-29844860 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:five_prime_UTR:1 | 262 | Chr1: 29842587-29842848 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G79340 | locus:2207350 | MC4 | metacaspase 4 | 2052 | Chr1: 29842587-29844638 | A. thaliana | metacaspase 4;(source:Araport11) | Encodes MCP2d, the predominant and constitutively expressed member of type II metacaspases (MCPs). MCP2d plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death (PCD). Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a�f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200. The mRNA is cell-to-cell mobile. | metacaspase 4 | AtMC4, AtMCP2d, MC4, MCA4, MCP2d |
AT1G79350 | locus:2207365 | EMB1135 | embryo defective 1135 | 8846 | Chr1: 29844621-29853466 | A. thaliana | RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11) | Encodes the Arabidopsis thaliana orthologue of metazoan Strawberry notch, a highly conserved co-activator of the developmental regulator Notch. It mediates stress-induced chromatin memory by modulating nucleosome occupancy by interacting with chromatin remodeling proteins of the ISWI and SWI/SNF classes. | RING/FYVE/PHD zinc finger superfamily protein | EMB1135, FGT1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79340:three_prime_UTR:1 | 270 | Chr1: 29844369-29844638 | Arabidopsis thaliana |
AT1G79350:three_prime_UTR:1 | 208 | Chr1: 29844621-29844828 | Arabidopsis thaliana |