Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 4, Exons: 11, Five Prime UTRs: 4, Genes: 2, mRNAs: 4, Three Prime UTRs: 6, Transposable Element: 1, Transposable Element Gene: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G11270:CDS:3 | 939 | Chr1: 3785715-3786653 | Arabidopsis thaliana |
AT1G11270:CDS:2 | 16 | Chr1: 3785833-3785848 | Arabidopsis thaliana |
AT1G11270:CDS:1 | 656 | Chr1: 3785998-3786653 | Arabidopsis thaliana |
AT1G11270:CDS:3.1 | 939 | Chr1: 3785715-3786653 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G11260:exon:4 | 1173 | Chr1: 3779651-3780823 | Arabidopsis thaliana |
AT1G11270:exon:9 | 312 | Chr1: 3780386-3780697 | Arabidopsis thaliana |
AT1G11270:exon:5 | 978 | Chr1: 3785697-3786674 | Arabidopsis thaliana |
AT1G11270:exon:2 | 232 | Chr1: 3786798-3787029 | Arabidopsis thaliana |
AT1G11270:exon:8 | 252 | Chr1: 3780446-3780697 | Arabidopsis thaliana |
AT1G11270:exon:6 | 152 | Chr1: 3785697-3785848 | Arabidopsis thaliana |
AT1G11270:exon:4 | 677 | Chr1: 3785998-3786674 | Arabidopsis thaliana |
AT1G11270:exon:3 | 191 | Chr1: 3786798-3786988 | Arabidopsis thaliana |
AT1G11270:exon:7 | 1168 | Chr1: 3785507-3786674 | Arabidopsis thaliana |
AT1G11270:exon:1 | 302 | Chr1: 3786798-3787099 | Arabidopsis thaliana |
AT1G11265:exon:1 | 4059 | Chr1: 3781235-3785293 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G11270:five_prime_UTR:2 | 232 | Chr1: 3786798-3787029 | Arabidopsis thaliana |
AT1G11270:five_prime_UTR:3 | 191 | Chr1: 3786798-3786988 | Arabidopsis thaliana |
AT1G11270:five_prime_UTR:4 | 21 | Chr1: 3786654-3786674 | Arabidopsis thaliana |
AT1G11270:five_prime_UTR:1 | 302 | Chr1: 3786798-3787099 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G11260 | locus:2202044 | STP1 | sugar transporter 1 | 3588 | Chr1: 3777236-3780823 | A. thaliana | sugar transporter 1;(source:Araport11) | Encodes a H+/hexose cotransporter. The mRNA is cell-to-cell mobile. | sugar transporter 1 | ATSTP1, STP1 |
AT1G11270 | locus:2202099 | AT1G11270 | 6714 | Chr1: 3780386-3787099 | A. thaliana | F-box and associated interaction domains-containing protein;(source:Araport11) | NULL | F-box and associated interaction domains-containing protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G11260.1 | 2483 | Chr1: 3777236-3780823 |
AT1G11270.2 | 1522 | Chr1: 3780386-3787029 |
AT1G11270.1 | 1470 | Chr1: 3785507-3787099 |
AT1G11265.1 | 4059 | Chr1: 3781235-3785293 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G11260:three_prime_UTR:1 | 690 | Chr1: 3780134-3780823 | Arabidopsis thaliana |
AT1G11270:three_prime_UTR:5 | 312 | Chr1: 3780386-3780697 | Arabidopsis thaliana |
AT1G11270:three_prime_UTR:2 | 18 | Chr1: 3785697-3785714 | Arabidopsis thaliana |
AT1G11270:three_prime_UTR:4 | 252 | Chr1: 3780446-3780697 | Arabidopsis thaliana |
AT1G11270:three_prime_UTR:1 | 136 | Chr1: 3785697-3785832 | Arabidopsis thaliana |
AT1G11270:three_prime_UTR:3 | 208 | Chr1: 3785507-3785714 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE12295 | 4957 | Chr1: 3780765-3785721 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G11265 | locus:2826783 | AT1G11265 | 4059 | Chr1: 3781235-3785293 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE12295:transposon_fragment:1 | 4957 | Chr1: 3780765-3785721 | Arabidopsis thaliana |