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Gene : EMB1135 A. thaliana

DB identifier  ? AT1G79350 Secondary Identifier  ? locus:2207365
Name  ? embryo defective 1135 Brief Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Computational Description  RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes the Arabidopsis thaliana orthologue of metazoan Strawberry notch, a highly conserved co-activator of the developmental regulator Notch. It mediates stress-induced chromatin memory by modulating nucleosome occupancy by interacting with chromatin remodeling proteins of the ISWI and SWI/SNF classes.
TAIR Short Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Aliases  EMB1135, FGT1

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 8846  
Location: Chr1:29844621-29853466 reverse strand

Gene models - EMB1135 AT1G79350

? Gene models

Transcripts: 1  Exons: 31  Introns: 30 

Overlapping Features

? Genome features that overlap coordinates of this Gene

32 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
FGT1_ARATH function Required for normal embryo development (PubMed:15266054, PubMed:18684657). Necessary to acquire heat stress (HS) memory, by modulating nucleosome occupancy and regulating heat-induced gene expression. Associates globally with the nucleosome-poor regions flanking the transcription units of expressed genes. Binds to the promoter regions, primarily to the proximal promoter just upstream of the transcriptional start sites (TSS) and somewhat more weakly to the region downstream of the transcription termination site (TTS), of actively expressed genes (e.g. HSA32, HSP18.2 and HSP22.0) in a heat-dependent fashion (PubMed:27680998).
FGT1_ARATH similarity Belongs to the SBNO family.

1 Proteins

Function

Interactions

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets