This web service takes an array of AGIs and returns a list fo documented interacting proteins for each gene of interest. Subcellular localisation data from SUBA (http://www.plantenergy.uwa.edu.au/suba2; Heazlewood et al., 2005).
URL: | http://bar.utoronto.ca/webservices/aiv/get_interactions.php |
Parameters: | An array of Arabidopsis gene identifier(s). See webservice JSON definition here |
Output: | A JSON array consisting of documented interacting protein, the interolog confidence score, the correlation coeffecient and an array of subcellular localisations. See JSON webservice definition here |
Example: | http://bar.utoronto.ca/webservices/aiv/get_interactions.php?request=[{"agi":"At1g02130"},{"agi":"At4g23810"},{"agi":"At3g01090"}] |
Given an AGI, this webservice returns the most recent annotation.
URL: | http://bar.utoronto.ca/webservices/agiToAnnot.php |
Parameters: | an Arabidopsis AGI gene identifier |
Output: | Most recent annotation for given AGI |
Example: | http://bar.utoronto.ca/webservices/agiToAnnot.php?request={"agi":"At1g44575"} |
Given an AGI, this webservice returns the expression signal.
URL: | http://bar.utoronto.ca/webservices/agiToSignal.php |
Parameters: | an Arabidopsis gene identifier |
Output: | {sample:signal} |
Example: | http://bar.utoronto.ca/webservices/agiToSignal.php?primaryGene=At1g44575&dataSource=atgenexp_plus&sample=ATGE_2_A |
This web service takes a primary AGI and returns an alignment of all its orthologs and paralogs, along with polymorphism information.
URL: | http://bar.utoronto.ca/webservices/cgi-bin/3DMSA/branches/more_devel/3DMSA_merged.cgi |
Parameters: | an Arabidopsis gene identifier |
Output: | A JSON data structure consisting of all orthologs |
This web service takes a Maize Gene identifier and returns an eFP image depicting its expression pattern based on the Sekhon et al. 2011 expression atlas data
URL: | http://bar.utoronto.ca/webservices/efp_webservices/cgi-bin/get_maizeefp_image.cgi |
Parameters: | A maize gene identifier. See webservice JSON definition here |
Output: | a PNG image |
Example: | http://bar.utoronto.ca/webservices/efp_webservices/cgi-bin/get_maizeefp_image.cgi?request={"geneid":"GRMZM2G336908_T01"} |
This web service takes an Arabidopsis gene identifier as input and returns an "electronic fluorescent pictographic" representation of the AGI's subcellular protein product localisation. Documented and predicted subcellular localisation data based on Heazlewood et al.'s SUBA database.
URL: | http://bar.utoronto.ca/webservices/efp_service/efp_service.php |
Parameters: | An Arabidopsis gene identifier in JSON format {"agi":"GENE"} |
Output: | a PNG image |
Example: | http://bar.utoronto.ca/webservices/efp_service/efp_service.php?request={"agi":"At1g04170","datasource":"Developmental_Map"} |
URL: | http://bar.utoronto.ca/webservices/get_expressologs.php |
Primary Input: | An array of gene identifiers (from Arabidopsis, Poplar, Medicago, Soybean, Barley or Rice) in JSON format. |
Output: | A JSON data structure consisting of all homologous genes that exhibit similar expression patterns in equivalent tissues in other plant species. |
Example: | http://bar.utoronto.ca/webservices/get_expressologs.php?request=[{"gene":"At2g26230"}] |
This web service takes Maize enzymes as input and returns the genes associated with them.
URL: | http://bar.utoronto.ca/webservices/get_efp_enzyme.php |
Parameters: | An array of enzymes (from Maize) in JSON format. |
Output: | A JSON data structure consisting of all genes associated with the enzymes and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_efp_enzyme.php?request=[{"enzyme":"FBP-Aldolase"}] |
This web service takes Maize metabolites as input and returns the genes associated with them.
URL: | http://bar.utoronto.ca/webservices/get_efp_metabolite.php |
Parameters: | An array of metabolites (from Maize) in JSON format. |
Output: | A JSON data structure consisting of all genes associated with the metabolites and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_efp_metabolite.php?request=[{"metabolite":"2-Oxoglutarate"}] |
This web service takes Rice metabolites as input and returns the genes associated with them.
URL: | http://bar.utoronto.ca/webservices/get_efp_metabolite_rice.php |
Parameters: | An array of metabolites (from Rice) in JSON format. |
Output: | A JSON data structure consisting of all genes associated with the metabolites and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_efp_metabolite_rice.php?request=[{"metabolite":"Alanine"}] |
This web service takes Maize genes as input and returns the enzymes associated with them.
URL: | http://bar.utoronto.ca/webservices/get_enzymes.php |
Parameters: | An array of genes (from Maize) in JSON format. |
Output: | A JSON data structure consisting of all enzymes associated with the gene and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_enzymes.php?request=[{"gene":"GRMZM2G088028"}] |
This web service takes Maize genes as input and returns the metabolites associated with them.
URL: | http://bar.utoronto.ca/webservices/get_metabolites.php |
Parameters: | An array of genes (from Maize) in JSON format. |
Output: | A JSON data structure consisting of all metabolites associated with the gene and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_metabolites.php?request=[{"gene":"GRMZM2G002652"}] |
This web service takes Rice genes as input and returns the metabolites associated with them.
URL: | http://bar.utoronto.ca/webservices/get_metabolites_rice.php |
Parameters: | An array of genes (from Rice) in JSON format. |
Output: | A JSON data structure consisting of all metabolites associated with the gene and eFP links. |
Example: | http://bar.utoronto.ca/webservices/get_metabolites_rice.php?request=[{"gene":"LOC_Os02g04740"}] |
This web service takes an AGI ID as input and returns GFF data
URL: | http://bar.utoronto.ca/webservices/araport/gff/get_tair10_gff.php |
Parameters: | An AGI ID |
Output: | A JSON data structure consisting of TAIR10 GFF data |
Example: | http://bar.utoronto.ca/webservices/araport/gff/get_tair10_gff.php?locus=at1g01010 |
Protemics Standard Initiative Common QUery InterfaCe is for accessing molecular interactions in BAR.
URL: | http://bar.utoronto.ca:9090/psicquic/webservices/current/search/ |
Parameters: | Query in the Molecular Interactions Query Language (MIQL) |
Output: | Interactions in PSI-MI TAB 2.5 format. |
Example: | http://bar.utoronto.ca:9090/psicquic/webservices/current/search/query/*?firstResult=0&maxResults=10 |
Webservice: | At-TAX Arabidopsis gene identifier-> signal |
Webservice: SUBA | Arabidopsis gene identifier->list of subcellular localisations |
Webservice: GabiPD JSON MapMan | AGI->metabolic pathway information |