Genomics
Transcript | Exons | Introns | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
NAC102
AT5G63790.1
1317 |
|
|
||||||||||
NAC102
AT5G63790.2
1207 |
|
|
Overlapping Features
Genome features that overlap coordinates of this Exon
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63790:CDS:4 | 369 | Chr5: 25526887-25527255 | Arabidopsis thaliana |
AT5G63790:CDS:4.1 | 369 | Chr5: 25526887-25527255 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63780:exon:6 | 267 | Chr5: 25526327-25526593 | Arabidopsis thaliana |
AT5G63790:exon:4 | 369 | Chr5: 25526887-25527255 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G63780 | locus:2160619 | SHA1 | shoot apical meristem arrest 1 | 2767 | Chr5: 25523827-25526593 | A. thaliana | RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11) | Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. | RING/FYVE/PHD zinc finger superfamily protein | SHA1 |
AT5G63790 | locus:2160634 | NAC102 | NAC domain containing protein 102 | 1773 | Chr5: 25526509-25528281 | A. thaliana | NAC domain containing protein 102;(source:Araport11) | Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings. Its expression can be induced by beta-cyclocitral, an oxidized by-product of beta-carotene generated in the chloroplasts, mediates a protective retrograde response that lowers the levels of toxic peroxides and carbonyls, limiting damage to intracellular components. The existence of four possible isoforms has been proposed. | NAC domain containing protein 102 | ANAC102, NAC102 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G63780.1 | 1709 | Chr5: 25523827-25526593 |
AT5G63790.1 | 1317 | Chr5: 25526509-25528013 |
AT5G63790.2 | 1207 | Chr5: 25526887-25528281 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G63780:three_prime_UTR:1 | 147 | Chr5: 25526447-25526593 | Arabidopsis thaliana |
AT5G63790:three_prime_UTR:1 | 378 | Chr5: 25526509-25526886 | Arabidopsis thaliana |