Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 49, Exons: 21, Five Prime UTR: 1, Genes: 2, mRNAs: 4, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61940:CDS:1 | 2181 | Chr5: 24867945-24870125 | Arabidopsis thaliana |
AT5G61940:CDS:4 | 129 | Chr5: 24870200-24870328 | Arabidopsis thaliana |
AT5G61940:CDS:5 | 153 | Chr5: 24870426-24870578 | Arabidopsis thaliana |
AT5G61940:CDS:6 | 47 | Chr5: 24870809-24870855 | Arabidopsis thaliana |
AT5G61940:CDS:7 | 161 | Chr5: 24870938-24871098 | Arabidopsis thaliana |
AT5G61940:CDS:8 | 104 | Chr5: 24871190-24871293 | Arabidopsis thaliana |
AT5G61940:CDS:9 | 192 | Chr5: 24871394-24871585 | Arabidopsis thaliana |
AT5G61940:CDS:11 | 207 | Chr5: 24871691-24871897 | Arabidopsis thaliana |
AT5G61940:CDS:13 | 142 | Chr5: 24871988-24872129 | Arabidopsis thaliana |
AT5G61940:CDS:15 | 134 | Chr5: 24872217-24872350 | Arabidopsis thaliana |
AT5G61940:CDS:16 | 93 | Chr5: 24872443-24872535 | Arabidopsis thaliana |
AT5G61940:CDS:17 | 84 | Chr5: 24872634-24872717 | Arabidopsis thaliana |
AT5G61940:CDS:2 | 2124 | Chr5: 24868002-24870125 | Arabidopsis thaliana |
AT5G61940:CDS:4.1 | 129 | Chr5: 24870200-24870328 | Arabidopsis thaliana |
AT5G61940:CDS:5.1 | 153 | Chr5: 24870426-24870578 | Arabidopsis thaliana |
AT5G61940:CDS:6.1 | 47 | Chr5: 24870809-24870855 | Arabidopsis thaliana |
AT5G61940:CDS:7.1 | 161 | Chr5: 24870938-24871098 | Arabidopsis thaliana |
AT5G61940:CDS:8.1 | 104 | Chr5: 24871190-24871293 | Arabidopsis thaliana |
AT5G61940:CDS:9.1 | 192 | Chr5: 24871394-24871585 | Arabidopsis thaliana |
AT5G61940:CDS:11.1 | 207 | Chr5: 24871691-24871897 | Arabidopsis thaliana |
AT5G61940:CDS:13.1 | 142 | Chr5: 24871988-24872129 | Arabidopsis thaliana |
AT5G61940:CDS:15.1 | 134 | Chr5: 24872217-24872350 | Arabidopsis thaliana |
AT5G61940:CDS:16.1 | 93 | Chr5: 24872443-24872535 | Arabidopsis thaliana |
AT5G61940:CDS:17.1 | 84 | Chr5: 24872634-24872717 | Arabidopsis thaliana |
AT5G61940:CDS:3 | 1971 | Chr5: 24868155-24870125 | Arabidopsis thaliana |
AT5G61940:CDS:4.2 | 129 | Chr5: 24870200-24870328 | Arabidopsis thaliana |
AT5G61940:CDS:5.2 | 153 | Chr5: 24870426-24870578 | Arabidopsis thaliana |
AT5G61940:CDS:6.2 | 47 | Chr5: 24870809-24870855 | Arabidopsis thaliana |
AT5G61940:CDS:7.2 | 161 | Chr5: 24870938-24871098 | Arabidopsis thaliana |
AT5G61940:CDS:8.2 | 104 | Chr5: 24871190-24871293 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61930:exon:1 | 1533 | Chr5: 24867280-24868812 | Arabidopsis thaliana |
AT5G61940:exon:1 | 2181 | Chr5: 24867945-24870125 | Arabidopsis thaliana |
AT5G61940:exon:19 | 282 | Chr5: 24872634-24872915 | Arabidopsis thaliana |
AT5G61940:exon:2 | 2155 | Chr5: 24867971-24870125 | Arabidopsis thaliana |
AT5G61940:exon:18 | 145 | Chr5: 24872634-24872778 | Arabidopsis thaliana |
AT5G61940:exon:10 | 78 | Chr5: 24871691-24871768 | Arabidopsis thaliana |
AT5G61940:exon:12 | 73 | Chr5: 24871825-24871897 | Arabidopsis thaliana |
AT5G61940:exon:14 | 66 | Chr5: 24872064-24872129 | Arabidopsis thaliana |
AT5G61940:exon:17 | 132 | Chr5: 24872634-24872765 | Arabidopsis thaliana |
AT5G61940:exon:3 | 1971 | Chr5: 24868155-24870125 | Arabidopsis thaliana |
AT5G61940:exon:4 | 129 | Chr5: 24870200-24870328 | Arabidopsis thaliana |
AT5G61940:exon:5 | 153 | Chr5: 24870426-24870578 | Arabidopsis thaliana |
AT5G61940:exon:6 | 47 | Chr5: 24870809-24870855 | Arabidopsis thaliana |
AT5G61940:exon:7 | 161 | Chr5: 24870938-24871098 | Arabidopsis thaliana |
AT5G61940:exon:8 | 104 | Chr5: 24871190-24871293 | Arabidopsis thaliana |
AT5G61940:exon:9 | 192 | Chr5: 24871394-24871585 | Arabidopsis thaliana |
AT5G61940:exon:11 | 207 | Chr5: 24871691-24871897 | Arabidopsis thaliana |
AT5G61940:exon:13 | 142 | Chr5: 24871988-24872129 | Arabidopsis thaliana |
AT5G61940:exon:15 | 134 | Chr5: 24872217-24872350 | Arabidopsis thaliana |
AT5G61940:exon:16 | 93 | Chr5: 24872443-24872535 | Arabidopsis thaliana |
AT5G61940:exon:20 | 321 | Chr5: 24872634-24872954 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61930:five_prime_UTR:1 | 1147 | Chr5: 24867666-24868812 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G61930 | locus:2156151 | APO3 | ACCUMULATION OF PHOTOSYSTEM ONE 3 | 3727 | Chr5: 24865086-24868812 | A. thaliana | APO RNA-binding protein (DUF794);(source:Araport11) | ACCUMULATION OF PHOTOSYSTEM ONE 3 | Arabidopsis thaliana protein of unknown function (DUF794) | APO3 |
AT5G61940 | locus:2156156 | AT5G61940 | 5010 | Chr5: 24867945-24872954 | A. thaliana | Ubiquitin carboxyl-terminal hydrolase-related protein;(source:Araport11) | NULL | Ubiquitin carboxyl-terminal hydrolase-related protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G61930.1 | 2511 | Chr5: 24866075-24868812 |
AT5G61940.2 | 3825 | Chr5: 24867945-24872915 |
AT5G61940.3 | 3662 | Chr5: 24867971-24872778 |
AT5G61940.4 | 3654 | Chr5: 24868155-24872954 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G61940:three_prime_UTR:3 | 198 | Chr5: 24872718-24872915 | Arabidopsis thaliana |
AT5G61940:three_prime_UTR:2 | 61 | Chr5: 24872718-24872778 | Arabidopsis thaliana |
AT5G61940:three_prime_UTR:1 | 48 | Chr5: 24872718-24872765 | Arabidopsis thaliana |
AT5G61940:three_prime_UTR:4 | 237 | Chr5: 24872718-24872954 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE89520 | 92 | Chr5: 24870375-24870466 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE89520:transposon_fragment:1 | 92 | Chr5: 24870375-24870466 | Arabidopsis thaliana |