Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57160:CDS:27 | 892 | Chr5: 23155150-23156041 | Arabidopsis thaliana |
AT5G57160:CDS:26 | 159 | Chr5: 23156163-23156321 | Arabidopsis thaliana |
AT5G57160:CDS:25 | 162 | Chr5: 23156413-23156574 | Arabidopsis thaliana |
AT5G57160:CDS:24 | 131 | Chr5: 23156669-23156799 | Arabidopsis thaliana |
AT5G57160:CDS:23 | 106 | Chr5: 23156878-23156983 | Arabidopsis thaliana |
AT5G57160:CDS:22 | 100 | Chr5: 23157080-23157179 | Arabidopsis thaliana |
AT5G57160:CDS:21 | 126 | Chr5: 23157292-23157417 | Arabidopsis thaliana |
AT5G57160:CDS:20 | 201 | Chr5: 23157629-23157829 | Arabidopsis thaliana |
AT5G57160:CDS:19 | 88 | Chr5: 23157935-23158022 | Arabidopsis thaliana |
AT5G57160:CDS:18 | 49 | Chr5: 23158152-23158200 | Arabidopsis thaliana |
AT5G57160:CDS:17 | 96 | Chr5: 23158307-23158402 | Arabidopsis thaliana |
AT5G57160:CDS:16 | 84 | Chr5: 23158534-23158617 | Arabidopsis thaliana |
AT5G57160:CDS:15 | 94 | Chr5: 23158799-23158892 | Arabidopsis thaliana |
AT5G57160:CDS:14 | 125 | Chr5: 23158983-23159107 | Arabidopsis thaliana |
AT5G57160:CDS:13 | 76 | Chr5: 23159308-23159383 | Arabidopsis thaliana |
AT5G57160:CDS:12 | 156 | Chr5: 23159473-23159628 | Arabidopsis thaliana |
AT5G57160:CDS:11 | 7 | Chr5: 23159719-23159725 | Arabidopsis thaliana |
AT5G57160:CDS:9 | 38 | Chr5: 23159811-23159848 | Arabidopsis thaliana |
AT5G57160:CDS:8 | 80 | Chr5: 23159931-23160010 | Arabidopsis thaliana |
AT5G57160:CDS:7 | 72 | Chr5: 23160112-23160183 | Arabidopsis thaliana |
AT5G57160:CDS:6 | 92 | Chr5: 23160378-23160469 | Arabidopsis thaliana |
AT5G57160:CDS:5 | 75 | Chr5: 23160596-23160670 | Arabidopsis thaliana |
AT5G57160:CDS:4 | 137 | Chr5: 23160793-23160929 | Arabidopsis thaliana |
AT5G57160:CDS:3 | 86 | Chr5: 23161023-23161108 | Arabidopsis thaliana |
AT5G57160:CDS:2 | 92 | Chr5: 23161181-23161272 | Arabidopsis thaliana |
AT5G57160:CDS:1 | 336 | Chr5: 23161353-23161688 | Arabidopsis thaliana |
AT5G57160:CDS:27.1 | 892 | Chr5: 23155150-23156041 | Arabidopsis thaliana |
AT5G57160:CDS:26.1 | 159 | Chr5: 23156163-23156321 | Arabidopsis thaliana |
AT5G57160:CDS:25.1 | 162 | Chr5: 23156413-23156574 | Arabidopsis thaliana |
AT5G57160:CDS:24.1 | 131 | Chr5: 23156669-23156799 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:exon:14 | 299 | Chr5: 23154768-23155066 | Arabidopsis thaliana |
AT5G57160:exon:28 | 1077 | Chr5: 23154965-23156041 | Arabidopsis thaliana |
AT5G57160:exon:11 | 7 | Chr5: 23159719-23159725 | Arabidopsis thaliana |
AT5G57160:exon:9 | 38 | Chr5: 23159811-23159848 | Arabidopsis thaliana |
AT5G57160:exon:8 | 80 | Chr5: 23159931-23160010 | Arabidopsis thaliana |
AT5G57160:exon:7 | 72 | Chr5: 23160112-23160183 | Arabidopsis thaliana |
AT5G57160:exon:6 | 92 | Chr5: 23160378-23160469 | Arabidopsis thaliana |
AT5G57160:exon:5 | 75 | Chr5: 23160596-23160670 | Arabidopsis thaliana |
AT5G57160:exon:4 | 137 | Chr5: 23160793-23160929 | Arabidopsis thaliana |
AT5G57160:exon:3 | 86 | Chr5: 23161023-23161108 | Arabidopsis thaliana |
AT5G57160:exon:2 | 92 | Chr5: 23161181-23161272 | Arabidopsis thaliana |
AT5G57160:exon:1 | 474 | Chr5: 23161353-23161826 | Arabidopsis thaliana |
AT5G57160:exon:27 | 892 | Chr5: 23155150-23156041 | Arabidopsis thaliana |
AT5G57160:exon:26 | 159 | Chr5: 23156163-23156321 | Arabidopsis thaliana |
AT5G57160:exon:25 | 162 | Chr5: 23156413-23156574 | Arabidopsis thaliana |
AT5G57160:exon:24 | 131 | Chr5: 23156669-23156799 | Arabidopsis thaliana |
AT5G57160:exon:23 | 106 | Chr5: 23156878-23156983 | Arabidopsis thaliana |
AT5G57160:exon:22 | 100 | Chr5: 23157080-23157179 | Arabidopsis thaliana |
AT5G57160:exon:21 | 126 | Chr5: 23157292-23157417 | Arabidopsis thaliana |
AT5G57160:exon:20 | 201 | Chr5: 23157629-23157829 | Arabidopsis thaliana |
AT5G57160:exon:19 | 88 | Chr5: 23157935-23158022 | Arabidopsis thaliana |
AT5G57160:exon:18 | 49 | Chr5: 23158152-23158200 | Arabidopsis thaliana |
AT5G57160:exon:17 | 96 | Chr5: 23158307-23158402 | Arabidopsis thaliana |
AT5G57160:exon:16 | 84 | Chr5: 23158534-23158617 | Arabidopsis thaliana |
AT5G57160:exon:15 | 94 | Chr5: 23158799-23158892 | Arabidopsis thaliana |
AT5G57160:exon:14 | 125 | Chr5: 23158983-23159107 | Arabidopsis thaliana |
AT5G57160:exon:13 | 76 | Chr5: 23159308-23159383 | Arabidopsis thaliana |
AT5G57160:exon:12 | 156 | Chr5: 23159473-23159628 | Arabidopsis thaliana |
AT5G57160:exon:10 | 29 | Chr5: 23159719-23159747 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57160:five_prime_UTR:1 | 138 | Chr5: 23161689-23161826 | Arabidopsis thaliana |
AT5G57160:five_prime_UTR:2 | 16 | Chr5: 23159732-23159747 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G57150 | locus:2175599 | AT5G57150 | 2893 | Chr5: 23152174-23155066 | A. thaliana | basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11) | NULL | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||
AT5G57160 | locus:2175544 | ATLIG4 | 6862 | Chr5: 23154965-23161826 | A. thaliana | DNA ligase IV;(source:Araport11) | Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. | DNA ligase IV | ATLIG4, LIG4 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G57150.1 | 980 | Chr5: 23152319-23155066 |
AT5G57160.2 | 2674 | Chr5: 23155150-23159747 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G57150:three_prime_UTR:4 | 194 | Chr5: 23154873-23155066 | Arabidopsis thaliana |
AT5G57160:three_prime_UTR:1 | 185 | Chr5: 23154965-23155149 | Arabidopsis thaliana |