Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1853
 |
| Location: | Chr5:19342405-19345127 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G47760:CDS:9 |
175
|
Chr5: 19343629-19343803 | Arabidopsis thaliana |
| AT5G47760:CDS:7 |
53
|
Chr5: 19343889-19343941 | Arabidopsis thaliana |
| AT5G47760:CDS:6 |
60
|
Chr5: 19344048-19344107 | Arabidopsis thaliana |
| AT5G47760:CDS:5 |
72
|
Chr5: 19344282-19344353 | Arabidopsis thaliana |
| AT5G47760:CDS:4 |
72
|
Chr5: 19344440-19344511 | Arabidopsis thaliana |
| AT5G47760:CDS:3 |
96
|
Chr5: 19344592-19344687 | Arabidopsis thaliana |
| AT5G47760:CDS:2 |
68
|
Chr5: 19344757-19344824 | Arabidopsis thaliana |
| AT5G47760:CDS:1 |
79
|
Chr5: 19344901-19344979 | Arabidopsis thaliana |
| AT5G47760:CDS:12 |
104
|
Chr5: 19343121-19343224 | Arabidopsis thaliana |
| AT5G47760:CDS:11 |
104
|
Chr5: 19343334-19343437 | Arabidopsis thaliana |
| AT5G47760:CDS:10 |
100
|
Chr5: 19343523-19343622 | Arabidopsis thaliana |
| AT5G47760:CDS:8 |
98
|
Chr5: 19343706-19343803 | Arabidopsis thaliana |
| AT5G47760:CDS:7.1 |
53
|
Chr5: 19343889-19343941 | Arabidopsis thaliana |
| AT5G47760:CDS:6.1 |
60
|
Chr5: 19344048-19344107 | Arabidopsis thaliana |
| AT5G47760:CDS:5.1 |
72
|
Chr5: 19344282-19344353 | Arabidopsis thaliana |
| AT5G47760:CDS:4.1 |
72
|
Chr5: 19344440-19344511 | Arabidopsis thaliana |
| AT5G47760:CDS:3.1 |
96
|
Chr5: 19344592-19344687 | Arabidopsis thaliana |
| AT5G47760:CDS:2.1 |
68
|
Chr5: 19344757-19344824 | Arabidopsis thaliana |
| AT5G47760:CDS:1.1 |
79
|
Chr5: 19344901-19344979 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G47750:exon:1 |
265
|
Chr5: 19342146-19342410 | Arabidopsis thaliana |
| AT5G47760:exon:9 |
281
|
Chr5: 19343523-19343803 | Arabidopsis thaliana |
| AT5G47760:exon:12 |
820
|
Chr5: 19342405-19343224 | Arabidopsis thaliana |
| AT5G47760:exon:11 |
104
|
Chr5: 19343334-19343437 | Arabidopsis thaliana |
| AT5G47760:exon:10 |
100
|
Chr5: 19343523-19343622 | Arabidopsis thaliana |
| AT5G47760:exon:8 |
98
|
Chr5: 19343706-19343803 | Arabidopsis thaliana |
| AT5G47760:exon:7 |
53
|
Chr5: 19343889-19343941 | Arabidopsis thaliana |
| AT5G47760:exon:6 |
60
|
Chr5: 19344048-19344107 | Arabidopsis thaliana |
| AT5G47760:exon:5 |
72
|
Chr5: 19344282-19344353 | Arabidopsis thaliana |
| AT5G47760:exon:4 |
72
|
Chr5: 19344440-19344511 | Arabidopsis thaliana |
| AT5G47760:exon:3 |
96
|
Chr5: 19344592-19344687 | Arabidopsis thaliana |
| AT5G47760:exon:2 |
68
|
Chr5: 19344757-19344824 | Arabidopsis thaliana |
| AT5G47760:exon:1 |
227
|
Chr5: 19344901-19345127 | Arabidopsis thaliana |
| AT5G47770:exon:1 |
424
|
Chr5: 19345110-19345533 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G47750:five_prime_UTR:1 |
265
|
Chr5: 19342146-19342410 | Arabidopsis thaliana |
| AT5G47760:five_prime_UTR:1 |
148
|
Chr5: 19344980-19345127 | Arabidopsis thaliana |
| AT5G47770:five_prime_UTR:1 |
187
|
Chr5: 19345110-19345296 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G47750 | locus:2160922 | D6PKL2 | D6 protein kinase like 2 |
2708
|
Chr5: 19339703-19342410 | A. thaliana | D6 protein kinase like 2;(source:Araport11) | D6PK family kinase involved in pulse-induced phototropism and continuous light-induced hypocotyl phototropism, minor contribution to time-dependent phototropism. | D6 protein kinase like 2 | D6PKL2, PK5 |
| AT5G47760 | locus:2160937 | PGLP2 | 2-phosphoglycolate phosphatase 2 |
2723
|
Chr5: 19342405-19345127 | A. thaliana | 2-phosphoglycolate phosphatase 2;(source:Araport11) | serine/threonine protein kinase | 2-phosphoglycolate phosphatase 2 | ATPGLP2, ATPK5, PGLP2 |
| AT5G47770 | locus:2160947 | FPS1 | farnesyl diphosphate synthase 1 |
2568
|
Chr5: 19345110-19347677 | A. thaliana | farnesyl diphosphate synthase 1;(source:Araport11) | Encodes a protein with farnesyl diphosphate synthase activity. | farnesyl diphosphate synthase 1 | FPS1 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G47750.1 |
2326
|
Chr5: 19339703-19342410 |
| AT5G47760.1 |
1770
|
Chr5: 19342405-19345127 |
| AT5G47770.1 |
1604
|
Chr5: 19345110-19347677 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G47760:three_prime_UTR:3 |
820
|
Chr5: 19342405-19343224 | Arabidopsis thaliana |
| AT5G47760:three_prime_UTR:2 |
104
|
Chr5: 19343334-19343437 | Arabidopsis thaliana |
| AT5G47760:three_prime_UTR:1 |
106
|
Chr5: 19343523-19343628 | Arabidopsis thaliana |
| AT5G47760:three_prime_UTR:4 |
716
|
Chr5: 19342405-19343120 | Arabidopsis thaliana |
