Genomics
Transcript | Exons | Introns | ||||||
---|---|---|---|---|---|---|---|---|
TRM10
AT5G47680.1
1390 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47680:CDS:2 | 252 | Chr5: 19316329-19316580 | Arabidopsis thaliana |
AT5G47680:CDS:1 | 783 | Chr5: 19316685-19317467 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47670:exon:5 | 832 | Chr5: 19315338-19316169 | Arabidopsis thaliana |
AT5G47670:exon:4 | 1087 | Chr5: 19315083-19316169 | Arabidopsis thaliana |
AT5G47680:exon:2 | 535 | Chr5: 19316046-19316580 | Arabidopsis thaliana |
AT5G47680:exon:1 | 855 | Chr5: 19316685-19317539 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47680:five_prime_UTR:1 | 72 | Chr5: 19317468-19317539 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G47670 | locus:2169028 | NF-YB6 | nuclear factor Y, subunit B6 | 1392 | Chr5: 19314778-19316169 | A. thaliana | nuclear factor Y, subunit B6;(source:Araport11) | Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development. | nuclear factor Y, subunit B6 | L1L, NF-YB6 |
AT5G47680 | locus:2169043 | TRM10 | tRNA modification 10 | 1494 | Chr5: 19316046-19317539 | A. thaliana | tRNA (guanine(9)-N1)-methyltransferase-like protein;(source:Araport11) | Encodes a protein involved in modification of nucleosides in tRNA. Mutants have 50% less 1-methylguanosine than wt counterparts. | NULL | AtTRM10, TRM10 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G47670.3 | 1182 | Chr5: 19314778-19316169 |
AT5G47670.1 | 1053 | Chr5: 19314778-19316169 |
AT5G47670.2 | 1087 | Chr5: 19315083-19316169 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G47670:three_prime_UTR:1 | 194 | Chr5: 19315976-19316169 | Arabidopsis thaliana |
AT5G47680:three_prime_UTR:1 | 283 | Chr5: 19316046-19316328 | Arabidopsis thaliana |