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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 14, Exons: 15, Five Prime UTRs: 3, Genes: 2, mRNAs: 5, Three Prime UTRs: 6, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44920:CDS:1 | 436 | Chr5: 18138965-18139400 | Arabidopsis thaliana |
AT5G44920:CDS:3 | 28 | Chr5: 18139440-18139467 | Arabidopsis thaliana |
AT5G44920:CDS:4 | 265 | Chr5: 18139730-18139994 | Arabidopsis thaliana |
AT5G44920:CDS:2 | 503 | Chr5: 18138965-18139467 | Arabidopsis thaliana |
AT5G44920:CDS:4.1 | 265 | Chr5: 18139730-18139994 | Arabidopsis thaliana |
AT5G44930:CDS:4 | 189 | Chr5: 18140626-18140814 | Arabidopsis thaliana |
AT5G44930:CDS:2 | 366 | Chr5: 18140904-18141269 | Arabidopsis thaliana |
AT5G44930:CDS:1 | 777 | Chr5: 18141368-18142144 | Arabidopsis thaliana |
AT5G44930:CDS:4.1 | 189 | Chr5: 18140626-18140814 | Arabidopsis thaliana |
AT5G44930:CDS:2.1 | 366 | Chr5: 18140904-18141269 | Arabidopsis thaliana |
AT5G44930:CDS:1.1 | 777 | Chr5: 18141368-18142144 | Arabidopsis thaliana |
AT5G44930:CDS:3 | 12 | Chr5: 18140798-18140809 | Arabidopsis thaliana |
AT5G44930:CDS:2.2 | 366 | Chr5: 18140904-18141269 | Arabidopsis thaliana |
AT5G44930:CDS:1.2 | 777 | Chr5: 18141368-18142144 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44920:exon:1 | 626 | Chr5: 18138775-18139400 | Arabidopsis thaliana |
AT5G44920:exon:3 | 28 | Chr5: 18139440-18139467 | Arabidopsis thaliana |
AT5G44920:exon:4 | 454 | Chr5: 18139730-18140183 | Arabidopsis thaliana |
AT5G44920:exon:2 | 693 | Chr5: 18138775-18139467 | Arabidopsis thaliana |
AT5G44920:exon:5 | 461 | Chr5: 18139730-18140190 | Arabidopsis thaliana |
AT5G44930:exon:8 | 647 | Chr5: 18138775-18139421 | Arabidopsis thaliana |
AT5G44930:exon:6 | 124 | Chr5: 18140308-18140431 | Arabidopsis thaliana |
AT5G44930:exon:7 | 202 | Chr5: 18140230-18140431 | Arabidopsis thaliana |
AT5G44930:exon:5 | 266 | Chr5: 18140549-18140814 | Arabidopsis thaliana |
AT5G44930:exon:1 | 792 | Chr5: 18141368-18142159 | Arabidopsis thaliana |
AT5G44930:exon:4 | 12 | Chr5: 18140798-18140809 | Arabidopsis thaliana |
AT5G44930:exon:3 | 366 | Chr5: 18140904-18141269 | Arabidopsis thaliana |
AT5G44930:exon:2 | 780 | Chr5: 18141368-18142147 | Arabidopsis thaliana |
AT5G06665:exon:2 | 522 | Chr5: 18138900-18139421 | Arabidopsis thaliana |
AT5G06665:exon:1 | 124 | Chr5: 18140308-18140431 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44920:five_prime_UTR:1 | 190 | Chr5: 18138775-18138964 | Arabidopsis thaliana |
AT5G44930:five_prime_UTR:1 | 15 | Chr5: 18142145-18142159 | Arabidopsis thaliana |
AT5G44930:five_prime_UTR:2 | 3 | Chr5: 18142145-18142147 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G44920 | locus:2155382 | AT5G44920 | 1416 | Chr5: 18138775-18140190 | A. thaliana | Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11) | Encodes a KASH domain protein that localizes to the nuclear envelope and affects nuclear morphology. | Toll-Interleukin-Resistance (TIR) domain family protein | AtTIK, TIK | |
AT5G06665 | AT5G06665 | 1532 | Chr5: 18138900-18140431 | A. thaliana | Natural antisense transcript overlaps with AT5G44920;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G44920.2 | 1108 | Chr5: 18138775-18140183 |
AT5G44920.1 | 1154 | Chr5: 18138775-18140190 |
AT5G44930.1 | 2195 | Chr5: 18138775-18142159 |
AT5G44930.2 | 1626 | Chr5: 18140230-18142159 |
AT5G44930.3 | 1158 | Chr5: 18140798-18142147 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G44920:three_prime_UTR:1 | 189 | Chr5: 18139995-18140183 | Arabidopsis thaliana |
AT5G44920:three_prime_UTR:2 | 196 | Chr5: 18139995-18140190 | Arabidopsis thaliana |
AT5G44930:three_prime_UTR:4 | 647 | Chr5: 18138775-18139421 | Arabidopsis thaliana |
AT5G44930:three_prime_UTR:2 | 124 | Chr5: 18140308-18140431 | Arabidopsis thaliana |
AT5G44930:three_prime_UTR:3 | 202 | Chr5: 18140230-18140431 | Arabidopsis thaliana |
AT5G44930:three_prime_UTR:1 | 77 | Chr5: 18140549-18140625 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE65370 | 4743 | Chr5: 18142156-18146898 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE65370:transposon_fragment:1 | 4743 | Chr5: 18142156-18146898 | Arabidopsis thaliana |