Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43930:CDS:1 | 98 | Chr5: 17677047-17677144 | Arabidopsis thaliana |
AT5G43930:CDS:2 | 159 | Chr5: 17677352-17677510 | Arabidopsis thaliana |
AT5G43930:CDS:3 | 117 | Chr5: 17677589-17677705 | Arabidopsis thaliana |
AT5G43930:CDS:4 | 85 | Chr5: 17677788-17677872 | Arabidopsis thaliana |
AT5G43930:CDS:7 | 109 | Chr5: 17678108-17678216 | Arabidopsis thaliana |
AT5G43930:CDS:8 | 68 | Chr5: 17678312-17678379 | Arabidopsis thaliana |
AT5G43930:CDS:9 | 126 | Chr5: 17678480-17678605 | Arabidopsis thaliana |
AT5G43930:CDS:11 | 860 | Chr5: 17678678-17679537 | Arabidopsis thaliana |
AT5G43930:CDS:12 | 201 | Chr5: 17679649-17679849 | Arabidopsis thaliana |
AT5G43930:CDS:13 | 61 | Chr5: 17679935-17679995 | Arabidopsis thaliana |
AT5G43930:CDS:14 | 114 | Chr5: 17680108-17680221 | Arabidopsis thaliana |
AT5G43930:CDS:15 | 114 | Chr5: 17680301-17680414 | Arabidopsis thaliana |
AT5G43930:CDS:16 | 69 | Chr5: 17680509-17680577 | Arabidopsis thaliana |
AT5G43930:CDS:1.1 | 98 | Chr5: 17677047-17677144 | Arabidopsis thaliana |
AT5G43930:CDS:2.1 | 159 | Chr5: 17677352-17677510 | Arabidopsis thaliana |
AT5G43930:CDS:3.1 | 117 | Chr5: 17677589-17677705 | Arabidopsis thaliana |
AT5G43930:CDS:4.1 | 85 | Chr5: 17677788-17677872 | Arabidopsis thaliana |
AT5G43930:CDS:7.1 | 109 | Chr5: 17678108-17678216 | Arabidopsis thaliana |
AT5G43930:CDS:8.1 | 68 | Chr5: 17678312-17678379 | Arabidopsis thaliana |
AT5G43930:CDS:9.1 | 126 | Chr5: 17678480-17678605 | Arabidopsis thaliana |
AT5G43930:CDS:11.1 | 860 | Chr5: 17678678-17679537 | Arabidopsis thaliana |
AT5G43930:CDS:12.1 | 201 | Chr5: 17679649-17679849 | Arabidopsis thaliana |
AT5G43930:CDS:13.1 | 61 | Chr5: 17679935-17679995 | Arabidopsis thaliana |
AT5G43930:CDS:14.1 | 114 | Chr5: 17680108-17680221 | Arabidopsis thaliana |
AT5G43930:CDS:15.1 | 114 | Chr5: 17680301-17680414 | Arabidopsis thaliana |
AT5G43930:CDS:16.1 | 69 | Chr5: 17680509-17680577 | Arabidopsis thaliana |
AT5G43930:CDS:1.2 | 98 | Chr5: 17677047-17677144 | Arabidopsis thaliana |
AT5G43930:CDS:2.2 | 159 | Chr5: 17677352-17677510 | Arabidopsis thaliana |
AT5G43930:CDS:3.2 | 117 | Chr5: 17677589-17677705 | Arabidopsis thaliana |
AT5G43930:CDS:5 | 89 | Chr5: 17677788-17677876 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43930:exon:1 | 350 | Chr5: 17676795-17677144 | Arabidopsis thaliana |
AT5G43930:exon:22 | 392 | Chr5: 17680691-17681082 | Arabidopsis thaliana |
AT5G43930:exon:2 | 345 | Chr5: 17676800-17677144 | Arabidopsis thaliana |
AT5G43930:exon:7 | 89 | Chr5: 17677788-17677876 | Arabidopsis thaliana |
AT5G43930:exon:8 | 68 | Chr5: 17677970-17678037 | Arabidopsis thaliana |
AT5G43930:exon:12 | 866 | Chr5: 17678672-17679537 | Arabidopsis thaliana |
AT5G43930:exon:19 | 100 | Chr5: 17680509-17680608 | Arabidopsis thaliana |
AT5G43930:exon:21 | 310 | Chr5: 17680691-17681000 | Arabidopsis thaliana |
AT5G43930:exon:3 | 322 | Chr5: 17676823-17677144 | Arabidopsis thaliana |
AT5G43930:exon:4 | 159 | Chr5: 17677352-17677510 | Arabidopsis thaliana |
AT5G43930:exon:5 | 117 | Chr5: 17677589-17677705 | Arabidopsis thaliana |
AT5G43930:exon:6 | 85 | Chr5: 17677788-17677872 | Arabidopsis thaliana |
AT5G43930:exon:9 | 109 | Chr5: 17678108-17678216 | Arabidopsis thaliana |
AT5G43930:exon:10 | 68 | Chr5: 17678312-17678379 | Arabidopsis thaliana |
AT5G43930:exon:11 | 126 | Chr5: 17678480-17678605 | Arabidopsis thaliana |
AT5G43930:exon:13 | 860 | Chr5: 17678678-17679537 | Arabidopsis thaliana |
AT5G43930:exon:14 | 201 | Chr5: 17679649-17679849 | Arabidopsis thaliana |
AT5G43930:exon:15 | 61 | Chr5: 17679935-17679995 | Arabidopsis thaliana |
AT5G43930:exon:16 | 114 | Chr5: 17680108-17680221 | Arabidopsis thaliana |
AT5G43930:exon:17 | 114 | Chr5: 17680301-17680414 | Arabidopsis thaliana |
AT5G43930:exon:18 | 75 | Chr5: 17680509-17680583 | Arabidopsis thaliana |
AT5G43930:exon:20 | 84 | Chr5: 17680691-17680774 | Arabidopsis thaliana |
AT5G43930:exon:23 | 245 | Chr5: 17680856-17681100 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43930:five_prime_UTR:1 | 252 | Chr5: 17676795-17677046 | Arabidopsis thaliana |
AT5G43930:five_prime_UTR:2 | 247 | Chr5: 17676800-17677046 | Arabidopsis thaliana |
AT5G43930:five_prime_UTR:3 | 224 | Chr5: 17676823-17677046 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G43930 | locus:2172442 | AT5G43930 | 4306 | Chr5: 17676795-17681100 | A. thaliana | Transducin family protein / WD-40 repeat family protein;(source:Araport11) | Encodes a WD40 repeat domain-containing protein which negatively regulates plant resistance to Phytophthoravpathogens by modulating the biosynthesis of endogenous jasmonic acid and salicylic acid. | Transducin family protein / WD-40 repeat family protein | RTP5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G43930.1 | 2831 | Chr5: 17676795-17681082 |
AT5G43930.3 | 2856 | Chr5: 17676795-17681082 |
AT5G43930.4 | 2847 | Chr5: 17676800-17681000 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G43930:three_prime_UTR:5 | 392 | Chr5: 17680691-17681082 | Arabidopsis thaliana |
AT5G43930:three_prime_UTR:2 | 31 | Chr5: 17680578-17680608 | Arabidopsis thaliana |
AT5G43930:three_prime_UTR:4 | 310 | Chr5: 17680691-17681000 | Arabidopsis thaliana |
AT5G43930:three_prime_UTR:1 | 6 | Chr5: 17680578-17680583 | Arabidopsis thaliana |
AT5G43930:three_prime_UTR:3 | 84 | Chr5: 17680691-17680774 | Arabidopsis thaliana |
AT5G43930:three_prime_UTR:6 | 245 | Chr5: 17680856-17681100 | Arabidopsis thaliana |