Genomics
Genome feature
| Region: |
transposable_element
|
Length: |
1783
 |
| Location: | Chr5:17172745-17174527 | ||
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 2, Five Prime UTR: 1, Genes: 2, Intergenic Region: 1, mRNAs: 2, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragments: 3
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42820:exon:1 |
1208
|
Chr5: 17171580-17172787 | Arabidopsis thaliana |
| AT5G42825:exon:1 |
994
|
Chr5: 17171807-17172800 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42820:five_prime_UTR:1 |
1208
|
Chr5: 17171580-17172787 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G42820 | locus:2165447 | U2AF35B |
3505
|
Chr5: 17169283-17172787 | A. thaliana | Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11) | U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. | Zinc finger C-x8-C-x5-C-x3-H type family protein | AtC3H60, ATU2AF35B, U2AF35B | |
| AT5G42825 | locus:1006230556 | AT5G42825 |
994
|
Chr5: 17171807-17172800 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
Intergenic Regions
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| intergenic_region_chrChr5_17172801..17176292 |
3492
|
Chr5: 17172801-17176292 | Arabidopsis thaliana |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G42820.1 |
2420
|
Chr5: 17170091-17172787 |
| AT5G42825.1 |
994
|
Chr5: 17171807-17172800 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42825:three_prime_UTR:1 |
543
|
Chr5: 17172258-17172800 | Arabidopsis thaliana |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE62040 |
280
|
Chr5: 17173203-17173482 | Arabidopsis thaliana |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE62035:transposon_fragment:1 |
458
|
Chr5: 17172745-17173202 | Arabidopsis thaliana |
| AT5TE62035:transposon_fragment:2 |
1045
|
Chr5: 17173483-17174527 | Arabidopsis thaliana |
| AT5TE62040:transposon_fragment:1 |
280
|
Chr5: 17173203-17173482 | Arabidopsis thaliana |
