Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1495
 |
| Location: | Chr5:17169283-17171704 reverse strand | ||
| Transcript | Exons | Introns | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
U2AF35B
AT5G42820.2
1495 |
|
|
||||||||||
|
U2AF35B
AT5G42820.1
2420 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 3, Exons: 7, Five Prime UTRs: 3, Genes: 3, mRNAs: 2, Three Prime UTRs: 4, Transposable Elements: 2, Transposon Fragments: 2
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42810:CDS:7 |
150
|
Chr5: 17169188-17169337 | Arabidopsis thaliana |
| AT5G42820:CDS:1 |
852
|
Chr5: 17170445-17171296 | Arabidopsis thaliana |
| AT5G42820:CDS:1.1 |
852
|
Chr5: 17170445-17171296 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42810:exon:7 |
272
|
Chr5: 17169188-17169459 | Arabidopsis thaliana |
| AT5G42820:exon:5 |
477
|
Chr5: 17169283-17169759 | Arabidopsis thaliana |
| AT5G42820:exon:3 |
893
|
Chr5: 17170410-17171302 | Arabidopsis thaliana |
| AT5G42820:exon:2 |
125
|
Chr5: 17171580-17171704 | Arabidopsis thaliana |
| AT5G42820:exon:4 |
1212
|
Chr5: 17170091-17171302 | Arabidopsis thaliana |
| AT5G42820:exon:1 |
1208
|
Chr5: 17171580-17172787 | Arabidopsis thaliana |
| AT5G06395:exon:1 |
884
|
Chr5: 17170305-17171188 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42820:five_prime_UTR:2 |
125
|
Chr5: 17171580-17171704 | Arabidopsis thaliana |
| AT5G42820:five_prime_UTR:3 |
6
|
Chr5: 17171297-17171302 | Arabidopsis thaliana |
| AT5G42820:five_prime_UTR:1 |
1208
|
Chr5: 17171580-17172787 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G42810 | locus:2165437 | IPK1 | inositol-pentakisphosphate 2-kinase 1 |
2758
|
Chr5: 17166702-17169459 | A. thaliana | inositol-pentakisphosphate 2-kinase 1;(source:Araport11) | Encodes an inositol tetra-/pentaphosphate 2-kinase, involved in the biosynthesis of phytic acid, a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate and mineral storage compound in plant seeds. Is also required for growth and modulates phosphate homeostasis at the transcriptional level. Together with ITPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses. | inositol-pentakisphosphate 2-kinase 1 | AtIP5, ATIPK1, IPK1 |
| AT5G42820 | locus:2165447 | U2AF35B |
3505
|
Chr5: 17169283-17172787 | A. thaliana | Zinc finger C-x8-C-x5-C-x3-H type family protein;(source:Araport11) | U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. | Zinc finger C-x8-C-x5-C-x3-H type family protein | AtC3H60, ATU2AF35B, U2AF35B | |
| AT5G06395 | AT5G06395 |
884
|
Chr5: 17170305-17171188 | A. thaliana | Natural antisense transcript overlaps with AT5G42820;(source:Araport11) | NULL |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G42810.1 |
1849
|
Chr5: 17166702-17169459 |
| AT5G42820.1 |
2420
|
Chr5: 17170091-17172787 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G42810:three_prime_UTR:1 |
122
|
Chr5: 17169338-17169459 | Arabidopsis thaliana |
| AT5G42820:three_prime_UTR:3 |
477
|
Chr5: 17169283-17169759 | Arabidopsis thaliana |
| AT5G42820:three_prime_UTR:1 |
35
|
Chr5: 17170410-17170444 | Arabidopsis thaliana |
| AT5G42820:three_prime_UTR:2 |
354
|
Chr5: 17170091-17170444 | Arabidopsis thaliana |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE62020 |
129
|
Chr5: 17169793-17169921 | Arabidopsis thaliana |
| AT5TE62025 |
120
|
Chr5: 17169995-17170114 | Arabidopsis thaliana |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5TE62020:transposon_fragment:1 |
129
|
Chr5: 17169793-17169921 | Arabidopsis thaliana |
| AT5TE62025:transposon_fragment:1 |
120
|
Chr5: 17169995-17170114 | Arabidopsis thaliana |
