Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 20, Exons: 13, Five Prime UTRs: 4, Gene: 1, mRNA: 1, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42230:CDS:1 | 238 | Chr5: 16881749-16881986 | Arabidopsis thaliana |
AT5G42230:CDS:2 | 108 | Chr5: 16882084-16882191 | Arabidopsis thaliana |
AT5G42230:CDS:3 | 93 | Chr5: 16882283-16882375 | Arabidopsis thaliana |
AT5G42230:CDS:4 | 93 | Chr5: 16882464-16882556 | Arabidopsis thaliana |
AT5G42230:CDS:5 | 86 | Chr5: 16882635-16882720 | Arabidopsis thaliana |
AT5G42230:CDS:6 | 279 | Chr5: 16882793-16883071 | Arabidopsis thaliana |
AT5G42230:CDS:7 | 134 | Chr5: 16883140-16883273 | Arabidopsis thaliana |
AT5G42230:CDS:8 | 93 | Chr5: 16883368-16883460 | Arabidopsis thaliana |
AT5G42230:CDS:9 | 118 | Chr5: 16883549-16883666 | Arabidopsis thaliana |
AT5G42230:CDS:10 | 168 | Chr5: 16883750-16883917 | Arabidopsis thaliana |
AT5G42230:CDS:1.1 | 238 | Chr5: 16881749-16881986 | Arabidopsis thaliana |
AT5G42230:CDS:2.1 | 108 | Chr5: 16882084-16882191 | Arabidopsis thaliana |
AT5G42230:CDS:3.1 | 93 | Chr5: 16882283-16882375 | Arabidopsis thaliana |
AT5G42230:CDS:4.1 | 93 | Chr5: 16882464-16882556 | Arabidopsis thaliana |
AT5G42230:CDS:5.1 | 86 | Chr5: 16882635-16882720 | Arabidopsis thaliana |
AT5G42230:CDS:6.1 | 279 | Chr5: 16882793-16883071 | Arabidopsis thaliana |
AT5G42230:CDS:7.1 | 134 | Chr5: 16883140-16883273 | Arabidopsis thaliana |
AT5G42230:CDS:8.1 | 93 | Chr5: 16883368-16883460 | Arabidopsis thaliana |
AT5G42230:CDS:9.1 | 118 | Chr5: 16883549-16883666 | Arabidopsis thaliana |
AT5G42230:CDS:10.1 | 168 | Chr5: 16883750-16883917 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42230:exon:1 | 475 | Chr5: 16880592-16881066 | Arabidopsis thaliana |
AT5G42230:exon:2 | 222 | Chr5: 16880671-16880892 | Arabidopsis thaliana |
AT5G42230:exon:3 | 93 | Chr5: 16880974-16881066 | Arabidopsis thaliana |
AT5G42230:exon:4 | 261 | Chr5: 16881726-16881986 | Arabidopsis thaliana |
AT5G42230:exon:5 | 108 | Chr5: 16882084-16882191 | Arabidopsis thaliana |
AT5G42230:exon:6 | 93 | Chr5: 16882283-16882375 | Arabidopsis thaliana |
AT5G42230:exon:7 | 93 | Chr5: 16882464-16882556 | Arabidopsis thaliana |
AT5G42230:exon:8 | 86 | Chr5: 16882635-16882720 | Arabidopsis thaliana |
AT5G42230:exon:9 | 279 | Chr5: 16882793-16883071 | Arabidopsis thaliana |
AT5G42230:exon:10 | 134 | Chr5: 16883140-16883273 | Arabidopsis thaliana |
AT5G42230:exon:11 | 93 | Chr5: 16883368-16883460 | Arabidopsis thaliana |
AT5G42230:exon:12 | 118 | Chr5: 16883549-16883666 | Arabidopsis thaliana |
AT5G42230:exon:13 | 713 | Chr5: 16883750-16884462 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42230:five_prime_UTR:1 | 475 | Chr5: 16880592-16881066 | Arabidopsis thaliana |
AT5G42230:five_prime_UTR:2 | 222 | Chr5: 16880671-16880892 | Arabidopsis thaliana |
AT5G42230:five_prime_UTR:3 | 93 | Chr5: 16880974-16881066 | Arabidopsis thaliana |
AT5G42230:five_prime_UTR:4 | 23 | Chr5: 16881726-16881748 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G42230 | locus:2157612 | scpl41 | serine carboxypeptidase-like 41 | 3871 | Chr5: 16880592-16884462 | A. thaliana | serine carboxypeptidase-like 41;(source:Araport11) | Serine� carboxypeptidase‐like� (SCPL)� enzyme involved in membrane lipid metabolism. | serine carboxypeptidase-like 41 | scpl41 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G42230:three_prime_UTR:1 | 545 | Chr5: 16883918-16884462 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE60965 | 134 | Chr5: 16884332-16884465 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE60965:transposon_fragment:1 | 134 | Chr5: 16884332-16884465 | Arabidopsis thaliana |