External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 10, Exons: 12, Five Prime UTRs: 5, Gene: 1, mRNAs: 7, Three Prime UTR: 1, Transposable Element: 1, Transposable Element Gene: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38865:CDS:6 | 624 | Chr5: 15561891-15562514 | Arabidopsis thaliana |
AT5G38865:CDS:1 | 124 | Chr5: 15562607-15562730 | Arabidopsis thaliana |
AT5G38865:CDS:5 | 609 | Chr5: 15561906-15562514 | Arabidopsis thaliana |
AT5G38865:CDS:1.1 | 124 | Chr5: 15562607-15562730 | Arabidopsis thaliana |
AT5G38865:CDS:4 | 602 | Chr5: 15561913-15562514 | Arabidopsis thaliana |
AT5G38865:CDS:1.2 | 124 | Chr5: 15562607-15562730 | Arabidopsis thaliana |
AT5G38865:CDS:3 | 425 | Chr5: 15562090-15562514 | Arabidopsis thaliana |
AT5G38865:CDS:1.3 | 124 | Chr5: 15562607-15562730 | Arabidopsis thaliana |
AT5G38865:CDS:2 | 422 | Chr5: 15562093-15562514 | Arabidopsis thaliana |
AT5G38865:CDS:1.4 | 124 | Chr5: 15562607-15562730 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38870:exon:1 | 658 | Chr5: 15561465-15562122 | Arabidopsis thaliana |
AT5G38865:exon:10 | 624 | Chr5: 15561891-15562514 | Arabidopsis thaliana |
AT5G38865:exon:2 | 277 | Chr5: 15562607-15562883 | Arabidopsis thaliana |
AT5G38865:exon:9 | 609 | Chr5: 15561906-15562514 | Arabidopsis thaliana |
AT5G38865:exon:1 | 376 | Chr5: 15562607-15562982 | Arabidopsis thaliana |
AT5G38865:exon:8 | 602 | Chr5: 15561913-15562514 | Arabidopsis thaliana |
AT5G38865:exon:3 | 253 | Chr5: 15562607-15562859 | Arabidopsis thaliana |
AT5G38865:exon:7 | 425 | Chr5: 15562090-15562514 | Arabidopsis thaliana |
AT5G38865:exon:4 | 234 | Chr5: 15562607-15562840 | Arabidopsis thaliana |
AT5G38865:exon:6 | 422 | Chr5: 15562093-15562514 | Arabidopsis thaliana |
AT5G38865:exon:5 | 168 | Chr5: 15562607-15562774 | Arabidopsis thaliana |
AT5G38880:exon:10 | 817 | Chr5: 15562939-15563755 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38865:five_prime_UTR:2 | 153 | Chr5: 15562731-15562883 | Arabidopsis thaliana |
AT5G38865:five_prime_UTR:1 | 252 | Chr5: 15562731-15562982 | Arabidopsis thaliana |
AT5G38865:five_prime_UTR:3 | 129 | Chr5: 15562731-15562859 | Arabidopsis thaliana |
AT5G38865:five_prime_UTR:4 | 110 | Chr5: 15562731-15562840 | Arabidopsis thaliana |
AT5G38865:five_prime_UTR:5 | 44 | Chr5: 15562731-15562774 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G38880 | locus:2152287 | AUG5 | augmin subunit 5 | 6312 | Chr5: 15562939-15569250 | A. thaliana | HAUS augmin-like complex subunit;(source:Araport11) | NULL | NULL | AUG5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G38870.1 | 658 | Chr5: 15561465-15562122 |
AT5G38865.1 | 901 | Chr5: 15561891-15562883 |
AT5G38865.2 | 985 | Chr5: 15561906-15562982 |
AT5G38865.3 | 855 | Chr5: 15561913-15562859 |
AT5G38865.4 | 659 | Chr5: 15562090-15562840 |
AT5G38865.5 | 590 | Chr5: 15562093-15562774 |
AT5G38880.1 | 3519 | Chr5: 15562939-15569250 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G38880:three_prime_UTR:1 | 682 | Chr5: 15562939-15563620 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE56255 | 404 | Chr5: 15561759-15562162 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G38870 | locus:2152277 | AT5G38870 | 658 | Chr5: 15561465-15562122 | A. thaliana | transposable_element_gene;(source:Araport11);pseudogene, hypothetical protein;(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE56255:transposon_fragment:1 | 404 | Chr5: 15561759-15562162 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...