Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 2, Gene: 1, Intergenic Region: 1, mRNAs: 2, Three Prime UTR: 1, Transposable Element Gene: 1, Transposon Fragments: 2
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27890:exon:6 | 706 | Chr5: 9905216-9905921 | Arabidopsis thaliana |
AT5G27895:exon:1 | 3643 | Chr5: 9906058-9909700 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27890 | locus:2143305 | AT5G27890 | 2282 | Chr5: 9903640-9905921 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr5_9905922..9906057 | 136 | Chr5: 9905922-9906057 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27890.1 | 1591 | Chr5: 9903640-9905921 |
AT5G27895.1 | 3643 | Chr5: 9906058-9909700 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27890:three_prime_UTR:1 | 574 | Chr5: 9905348-9905921 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27895 | locus:504955197 | AT5G27895 | 3643 | Chr5: 9906058-9909700 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 3.2e-102 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE36080:transposon_fragment:2 | 68 | Chr5: 9905892-9905959 | Arabidopsis thaliana |
AT5TE36080:transposon_fragment:1 | 1899 | Chr5: 9906110-9908008 | Arabidopsis thaliana |