Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:CDS:2 | 99 | Chr5: 9861327-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:5 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:11 | 136 | Chr5: 9862607-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:6 | 381 | Chr5: 9861728-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.1 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:8 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.2 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.1 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:4 | 74 | Chr5: 9861352-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:5.1 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.3 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.2 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3.1 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:7 | 93 | Chr5: 9861738-9861830 | Arabidopsis thaliana |
AT5G27830:CDS:9 | 191 | Chr5: 9861918-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.4 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:12.3 | 127 | Chr5: 9862616-9862742 | Arabidopsis thaliana |
AT5G27830:CDS:3.2 | 82 | Chr5: 9861344-9861425 | Arabidopsis thaliana |
AT5G27830:CDS:8.1 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:CDS:10.5 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:CDS:11.1 | 136 | Chr5: 9862607-9862742 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:exon:6 | 99 | Chr5: 9861327-9861425 | Arabidopsis thaliana |
AT5G27830:exon:12 | 216 | Chr5: 9862607-9862822 | Arabidopsis thaliana |
AT5G27830:exon:3 | 877 | Chr5: 9861232-9862108 | Arabidopsis thaliana |
AT5G27830:exon:2 | 194 | Chr5: 9861232-9861425 | Arabidopsis thaliana |
AT5G27830:exon:15 | 322 | Chr5: 9862616-9862937 | Arabidopsis thaliana |
AT5G27830:exon:4 | 144 | Chr5: 9861282-9861425 | Arabidopsis thaliana |
AT5G27830:exon:7 | 385 | Chr5: 9861724-9862108 | Arabidopsis thaliana |
AT5G27830:exon:16 | 323 | Chr5: 9862616-9862938 | Arabidopsis thaliana |
AT5G27830:exon:8 | 93 | Chr5: 9861738-9861830 | Arabidopsis thaliana |
AT5G27830:exon:10 | 191 | Chr5: 9861918-9862108 | Arabidopsis thaliana |
AT5G27830:exon:14 | 281 | Chr5: 9862616-9862896 | Arabidopsis thaliana |
AT5G27830:exon:5 | 137 | Chr5: 9861289-9861425 | Arabidopsis thaliana |
AT5G27830:exon:9 | 371 | Chr5: 9861738-9862108 | Arabidopsis thaliana |
AT5G27830:exon:11 | 323 | Chr5: 9862215-9862537 | Arabidopsis thaliana |
AT5G27830:exon:13 | 291 | Chr5: 9862607-9862897 | Arabidopsis thaliana |
AT5G27840:exon:10 | 412 | Chr5: 9862923-9863334 | Arabidopsis thaliana |
AT5G27840:exon:9 | 584 | Chr5: 9862923-9863506 | Arabidopsis thaliana |
AT5G27840:exon:8 | 411 | Chr5: 9862924-9863334 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:five_prime_UTR:3 | 496 | Chr5: 9861232-9861727 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:2 | 112 | Chr5: 9861232-9861343 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:4 | 70 | Chr5: 9861282-9861351 | Arabidopsis thaliana |
AT5G27830:five_prime_UTR:5 | 55 | Chr5: 9861289-9861343 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G27830 | locus:2180320 | AT5G27830 | 1763 | Chr5: 9861176-9862938 | A. thaliana | folate receptor family protein;(source:Araport11) | Folate receptor family protein;(source:Araport11).Expression correlates with increase in bound folate in planta. | NULL | FBP | |
AT5G27840 | locus:2180330 | TOPP8 | 2250 | Chr5: 9862923-9865172 | A. thaliana | Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11) | Encodes a Type One Protein Phosphatase that acts as a nucleocytoplasmic negative regulator of tip growth. Mutants affect pollen germination, pollen tube growth, and root hair growth. It acts genetically downstream of ANX1 (AT3G04690) and ANX2 (AT5G28680) and is functionally redundant with ATUNIS1/TOPP9 (AT3G05580). | Calcineurin-like metallo-phosphoesterase superfamily protein | AUN2, TOPP8 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G27830.4 | 1076 | Chr5: 9861176-9862822 |
AT5G27830.6 | 1522 | Chr5: 9861232-9862937 |
AT5G27830.1 | 1210 | Chr5: 9861232-9862937 |
AT5G27830.2 | 1025 | Chr5: 9861289-9862896 |
AT5G27830.5 | 1122 | Chr5: 9861289-9862897 |
AT5G27840.4 | 1834 | Chr5: 9862923-9865123 |
AT5G27840.1 | 1689 | Chr5: 9862923-9865172 |
AT5G27840.3 | 1861 | Chr5: 9862923-9865172 |
AT5G27840.2 | 1648 | Chr5: 9862924-9865038 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G27830:three_prime_UTR:1 | 80 | Chr5: 9862743-9862822 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:4 | 195 | Chr5: 9862743-9862937 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:5 | 196 | Chr5: 9862743-9862938 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:2 | 154 | Chr5: 9862743-9862896 | Arabidopsis thaliana |
AT5G27830:three_prime_UTR:3 | 155 | Chr5: 9862743-9862897 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:5 | 412 | Chr5: 9862923-9863334 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:6 | 388 | Chr5: 9862923-9863310 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:4 | 542 | Chr5: 9862923-9863464 | Arabidopsis thaliana |
AT5G27840:three_prime_UTR:3 | 411 | Chr5: 9862924-9863334 | Arabidopsis thaliana |