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Gene : SCL28 A. thaliana

DB identifier  ? AT5G18810 Secondary Identifier  ? locus:2144945
Name  ? SC35-like splicing factor 28 Brief Description  SC35-like splicing factor 28
TAIR Computational Description  SC35-like splicing factor 28;(source:Araport11)
TAIR Curator Summary  encodes an SC35-like splicing factor of 28 kD localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
TAIR Short Description  SC35-like splicing factor 28
TAIR Aliases  At-SCL28, SCL28

2 Gene Rifs

1 Organism

23 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2682  
Location: Chr5:6268644-6271325 reverse strand

Gene models - SCL28 AT5G18810

? Gene models

Transcripts: 2  Exons: 13  Introns: 11 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SRC28_ARATH function Involved in intron recognition and spliceosome assembly (Probable). Probably active at the 5' splice sites.
SRC28_ARATH similarity Belongs to the splicing factor SR family. SCL subfamily.

2 Proteins

Function

Gene Ontology

cellular component
spliceosomal complex  ? ECO  
nuclear speck  ? ECO  
molecular function
RNA binding  ? ECO  
biological process
mRNA splicing, via spliceosome  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets