Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1683
 |
| Location: | Chr5:6028285-6030801 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNAs: 8, CDSs: 35, Exons: 31, Five Prime UTRs: 4, Genes: 2, mRNAs: 5, Three Prime UTR: 1
Antisense lncRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G18245.1 |
2981
|
Chr5: 6028020-6033337 |
| AT5G18245.2 |
704
|
Chr5: 6028119-6029182 |
| AT5G18245.3 |
2472
|
Chr5: 6028151-6033342 |
| AT5G18245.4 |
2220
|
Chr5: 6028151-6033342 |
| AT5G18245.5 |
2590
|
Chr5: 6028151-6033342 |
| AT5G18245.6 |
3039
|
Chr5: 6028246-6033302 |
| AT5G18245.7 |
2323
|
Chr5: 6028285-6033231 |
| AT5G18245.8 |
2047
|
Chr5: 6028830-6033341 |
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G18240:CDS:9 |
693
|
Chr5: 6028617-6029309 | Arabidopsis thaliana |
| AT5G18240:CDS:6 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:CDS:5 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:CDS:4 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
| AT5G18240:CDS:2 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:CDS:1 |
208
|
Chr5: 6030366-6030573 | Arabidopsis thaliana |
| AT5G18240:CDS:7 |
711
|
Chr5: 6028617-6029327 | Arabidopsis thaliana |
| AT5G18240:CDS:6.1 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:CDS:5.1 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:CDS:4.1 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
| AT5G18240:CDS:2.1 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:CDS:1.1 |
208
|
Chr5: 6030366-6030573 | Arabidopsis thaliana |
| AT5G18240:CDS:8 |
705
|
Chr5: 6028617-6029321 | Arabidopsis thaliana |
| AT5G18240:CDS:6.2 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:CDS:5.2 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:CDS:4.2 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
| AT5G18240:CDS:2.2 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:CDS:1.2 |
208
|
Chr5: 6030366-6030573 | Arabidopsis thaliana |
| AT5G18240:CDS:9.1 |
693
|
Chr5: 6028617-6029309 | Arabidopsis thaliana |
| AT5G18240:CDS:6.3 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:CDS:5.3 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:CDS:4.3 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
| AT5G18240:CDS:2.3 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:CDS:1.3 |
208
|
Chr5: 6030366-6030573 | Arabidopsis thaliana |
| AT5G18240:CDS:7.1 |
711
|
Chr5: 6028617-6029327 | Arabidopsis thaliana |
| AT5G18240:CDS:6.4 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:CDS:5.4 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:CDS:4.4 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
| AT5G18240:CDS:2.4 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:CDS:1.4 |
208
|
Chr5: 6030366-6030573 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G18245:exon:1 |
1263
|
Chr5: 6028020-6029282 | Arabidopsis thaliana |
| AT5G18245:exon:2 |
284
|
Chr5: 6028119-6028402 | Arabidopsis thaliana |
| AT5G18245:exon:8 |
66
|
Chr5: 6028517-6028582 | Arabidopsis thaliana |
| AT5G18245:exon:9 |
354
|
Chr5: 6028829-6029182 | Arabidopsis thaliana |
| AT5G18245:exon:4 |
432
|
Chr5: 6028151-6028582 | Arabidopsis thaliana |
| AT5G18245:exon:3 |
180
|
Chr5: 6028151-6028330 | Arabidopsis thaliana |
| AT5G18245:exon:16 |
775
|
Chr5: 6029822-6030596 | Arabidopsis thaliana |
| AT5G18245:exon:5 |
1132
|
Chr5: 6028151-6029282 | Arabidopsis thaliana |
| AT5G18245:exon:12 |
83
|
Chr5: 6029602-6029684 | Arabidopsis thaliana |
| AT5G18245:exon:15 |
407
|
Chr5: 6029822-6030228 | Arabidopsis thaliana |
| AT5G18245:exon:6 |
2351
|
Chr5: 6028246-6030596 | Arabidopsis thaliana |
| AT5G18245:exon:7 |
298
|
Chr5: 6028285-6028582 | Arabidopsis thaliana |
| AT5G18245:exon:10 |
454
|
Chr5: 6028829-6029282 | Arabidopsis thaliana |
| AT5G18245:exon:14 |
995
|
Chr5: 6029602-6030596 | Arabidopsis thaliana |
| AT5G18245:exon:11 |
453
|
Chr5: 6028830-6029282 | Arabidopsis thaliana |
| AT5G18245:exon:13 |
627
|
Chr5: 6029602-6030228 | Arabidopsis thaliana |
| AT5G18245:exon:17 |
240
|
Chr5: 6030357-6030596 | Arabidopsis thaliana |
| AT5G18245:exon:18 |
92
|
Chr5: 6030790-6030881 | Arabidopsis thaliana |
| AT5G18240:exon:12 |
1037
|
Chr5: 6028285-6029321 | Arabidopsis thaliana |
| AT5G18240:exon:4 |
212
|
Chr5: 6030366-6030577 | Arabidopsis thaliana |
| AT5G18240:exon:2 |
138
|
Chr5: 6030664-6030801 | Arabidopsis thaliana |
| AT5G18240:exon:13 |
1025
|
Chr5: 6028285-6029309 | Arabidopsis thaliana |
| AT5G18240:exon:11 |
1043
|
Chr5: 6028285-6029327 | Arabidopsis thaliana |
| AT5G18240:exon:5 |
77
|
Chr5: 6030201-6030277 | Arabidopsis thaliana |
| AT5G18240:exon:3 |
216
|
Chr5: 6030366-6030581 | Arabidopsis thaliana |
| AT5G18240:exon:1 |
139
|
Chr5: 6030664-6030802 | Arabidopsis thaliana |
| AT5G18240:exon:10 |
693
|
Chr5: 6028617-6029309 | Arabidopsis thaliana |
| AT5G18240:exon:9 |
70
|
Chr5: 6029623-6029692 | Arabidopsis thaliana |
| AT5G18240:exon:8 |
85
|
Chr5: 6029767-6029851 | Arabidopsis thaliana |
| AT5G18240:exon:7 |
58
|
Chr5: 6029958-6030015 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G18240:five_prime_UTR:4 |
4
|
Chr5: 6030574-6030577 | Arabidopsis thaliana |
| AT5G18240:five_prime_UTR:2 |
138
|
Chr5: 6030664-6030801 | Arabidopsis thaliana |
| AT5G18240:five_prime_UTR:3 |
8
|
Chr5: 6030574-6030581 | Arabidopsis thaliana |
| AT5G18240:five_prime_UTR:1 |
139
|
Chr5: 6030664-6030802 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G18245 | locus:4515103585 | AT5G18245 |
5323
|
Chr5: 6028020-6033342 | A. thaliana | Natural antisense transcript overlaps with AT5G18240;(source:Araport11) | NULL | other RNA | ||
| AT5G18240 | locus:2172394 | MYR1 | myb-related protein 1 |
2518
|
Chr5: 6028285-6030802 | A. thaliana | myb-related protein 1;(source:Araport11) | Encodes MYR1 (MYR1). | myb-related protein 1 | ATMYR1, MYR1 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT5G18240.3 |
1665
|
Chr5: 6028285-6030801 |
| AT5G18240.5 |
1677
|
Chr5: 6028285-6030801 |
| AT5G18240.2 |
1670
|
Chr5: 6028285-6030802 |
| AT5G18240.1 |
1688
|
Chr5: 6028285-6030802 |
| AT5G18240.6 |
963
|
Chr5: 6028617-6030257 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G18240:three_prime_UTR:1 |
332
|
Chr5: 6028285-6028616 | Arabidopsis thaliana |
