Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12440:CDS:8 | 290 | Chr5: 4035891-4036180 | Arabidopsis thaliana |
AT5G12440:CDS:7 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:CDS:6 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:CDS:5 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:CDS:4 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
AT5G12440:CDS:3 | 959 | Chr5: 4037646-4038604 | Arabidopsis thaliana |
AT5G12440:CDS:8.1 | 290 | Chr5: 4035891-4036180 | Arabidopsis thaliana |
AT5G12440:CDS:7.1 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:CDS:6.1 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:CDS:5.1 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:CDS:4.1 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
AT5G12440:CDS:3.1 | 959 | Chr5: 4037646-4038604 | Arabidopsis thaliana |
AT5G12440:CDS:8.2 | 290 | Chr5: 4035891-4036180 | Arabidopsis thaliana |
AT5G12440:CDS:7.2 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:CDS:6.2 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:CDS:5.2 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:CDS:4.2 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
AT5G12440:CDS:3.2 | 959 | Chr5: 4037646-4038604 | Arabidopsis thaliana |
AT5G12440:CDS:8.3 | 290 | Chr5: 4035891-4036180 | Arabidopsis thaliana |
AT5G12440:CDS:7.3 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:CDS:6.3 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:CDS:5.3 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:CDS:4.3 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
AT5G12440:CDS:2 | 1013 | Chr5: 4037646-4038658 | Arabidopsis thaliana |
AT5G12440:CDS:1 | 39 | Chr5: 4041217-4041255 | Arabidopsis thaliana |
AT5G12440:CDS:8.4 | 290 | Chr5: 4035891-4036180 | Arabidopsis thaliana |
AT5G12440:CDS:7.4 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:CDS:6.4 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:CDS:5.4 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:CDS:4.4 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12440:exon:25 | 468 | Chr5: 4035181-4035648 | Arabidopsis thaliana |
AT5G12440:exon:16 | 1287 | Chr5: 4037646-4038932 | Arabidopsis thaliana |
AT5G12440:exon:12 | 116 | Chr5: 4041219-4041334 | Arabidopsis thaliana |
AT5G12440:exon:13 | 493 | Chr5: 4041217-4041709 | Arabidopsis thaliana |
AT5G12440:exon:10 | 491 | Chr5: 4041219-4041709 | Arabidopsis thaliana |
AT5G12440:exon:14 | 432 | Chr5: 4041217-4041648 | Arabidopsis thaliana |
AT5G12440:exon:15 | 129 | Chr5: 4041217-4041345 | Arabidopsis thaliana |
AT5G12440:exon:24 | 327 | Chr5: 4035322-4035648 | Arabidopsis thaliana |
AT5G12440:exon:23 | 48 | Chr5: 4035738-4035785 | Arabidopsis thaliana |
AT5G12440:exon:22 | 316 | Chr5: 4035865-4036180 | Arabidopsis thaliana |
AT5G12440:exon:21 | 243 | Chr5: 4036286-4036528 | Arabidopsis thaliana |
AT5G12440:exon:20 | 104 | Chr5: 4036626-4036729 | Arabidopsis thaliana |
AT5G12440:exon:19 | 180 | Chr5: 4036827-4037006 | Arabidopsis thaliana |
AT5G12440:exon:18 | 177 | Chr5: 4037180-4037356 | Arabidopsis thaliana |
AT5G12440:exon:17 | 1013 | Chr5: 4037646-4038658 | Arabidopsis thaliana |
AT5G12440:exon:11 | 127 | Chr5: 4041219-4041345 | Arabidopsis thaliana |
AT5G12450:exon:1 | 240 | Chr5: 4040937-4041176 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12440:five_prime_UTR:16 | 328 | Chr5: 4038605-4038932 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:15 | 116 | Chr5: 4041219-4041334 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:10 | 454 | Chr5: 4041256-4041709 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:13 | 491 | Chr5: 4041219-4041709 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:11 | 393 | Chr5: 4041256-4041648 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:12 | 90 | Chr5: 4041256-4041345 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:17 | 54 | Chr5: 4038605-4038658 | Arabidopsis thaliana |
AT5G12440:five_prime_UTR:14 | 127 | Chr5: 4041219-4041345 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G12440 | locus:505006612 | AT5G12440 | 7074 | Chr5: 4035181-4042254 | A. thaliana | CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein;(source:Araport11) | NULL | CCCH-type zinc fingerfamily protein with RNA-binding domain | AtC3H55 | |
AT5G12450 | locus:505006613 | AT5G12450 | 240 | Chr5: 4040937-4041176 | A. thaliana | FBD-like domain family protein;(source:Araport11) | NULL | FBD-like domain family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G12440.1 | 2823 | Chr5: 4035181-4038932 |
AT5G12440.9 | 2901 | Chr5: 4035322-4042167 |
AT5G12440.3 | 3031 | Chr5: 4035322-4042167 |
AT5G12440.10 | 2874 | Chr5: 4035322-4042171 |
AT5G12440.11 | 2685 | Chr5: 4035322-4042171 |
AT5G12440.2 | 3060 | Chr5: 4035322-4042198 |
AT5G12440.5 | 3001 | Chr5: 4035322-4042198 |
AT5G12440.6 | 2990 | Chr5: 4035322-4042254 |
AT5G12440.8 | 2929 | Chr5: 4035322-4042254 |
AT5G12440.7 | 2955 | Chr5: 4035322-4042254 |
AT5G12440.4 | 3316 | Chr5: 4035322-4042254 |
AT5G12450.1 | 240 | Chr5: 4040937-4041176 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G12440:three_prime_UTR:4 | 468 | Chr5: 4035181-4035648 | Arabidopsis thaliana |
AT5G12440:three_prime_UTR:3 | 327 | Chr5: 4035322-4035648 | Arabidopsis thaliana |
AT5G12440:three_prime_UTR:2 | 48 | Chr5: 4035738-4035785 | Arabidopsis thaliana |
AT5G12440:three_prime_UTR:1 | 26 | Chr5: 4035865-4035890 | Arabidopsis thaliana |
AT5G12450:three_prime_UTR:1 | 48 | Chr5: 4041129-4041176 | Arabidopsis thaliana |