Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08540:CDS:1 | 453 | Chr5: 2763914-2764366 | Arabidopsis thaliana |
AT5G08540:CDS:2 | 96 | Chr5: 2764450-2764545 | Arabidopsis thaliana |
AT5G08540:CDS:3 | 178 | Chr5: 2764652-2764829 | Arabidopsis thaliana |
AT5G08540:CDS:4 | 98 | Chr5: 2764906-2765003 | Arabidopsis thaliana |
AT5G08540:CDS:5 | 62 | Chr5: 2765147-2765208 | Arabidopsis thaliana |
AT5G08540:CDS:6 | 154 | Chr5: 2765278-2765431 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08540:exon:1 | 544 | Chr5: 2763823-2764366 | Arabidopsis thaliana |
AT5G08540:exon:2 | 96 | Chr5: 2764450-2764545 | Arabidopsis thaliana |
AT5G08540:exon:3 | 178 | Chr5: 2764652-2764829 | Arabidopsis thaliana |
AT5G08540:exon:4 | 98 | Chr5: 2764906-2765003 | Arabidopsis thaliana |
AT5G08540:exon:5 | 62 | Chr5: 2765147-2765208 | Arabidopsis thaliana |
AT5G08540:exon:6 | 457 | Chr5: 2765278-2765734 | Arabidopsis thaliana |
AT5G08550:exon:6 | 532 | Chr5: 2765642-2766173 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08540:five_prime_UTR:1 | 91 | Chr5: 2763823-2763913 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G08540 | locus:2159532 | AT5G08540 | 1912 | Chr5: 2763823-2765734 | A. thaliana | ribosomal RNA small subunit methyltransferase J;(source:Araport11) | Membrane protein | NULL | ||
AT5G08550 | locus:2159552 | ILP1 | increased level of polyploidy1-1D | 4641 | Chr5: 2765642-2770282 | A. thaliana | GC-rich sequence DNA-binding factor-like protein;(source:Araport11) | Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. | GC-rich sequence DNA-binding factor-like protein | ILP1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G08540:three_prime_UTR:1 | 303 | Chr5: 2765432-2765734 | Arabidopsis thaliana |
AT5G08550:three_prime_UTR:1 | 339 | Chr5: 2765642-2765980 | Arabidopsis thaliana |