Genomics
Transcript | Exons | Introns | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SDP1
AT5G04040.1
3300 |
|
|
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SDP1
AT5G04040.2
3064 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04040:CDS:1 | 1422 | Chr5: 1090346-1091767 | Arabidopsis thaliana |
AT5G04040:CDS:2 | 144 | Chr5: 1091851-1091994 | Arabidopsis thaliana |
AT5G04040:CDS:3 | 912 | Chr5: 1092092-1093003 | Arabidopsis thaliana |
AT5G04040:CDS:1.1 | 1422 | Chr5: 1090346-1091767 | Arabidopsis thaliana |
AT5G04040:CDS:2.1 | 144 | Chr5: 1091851-1091994 | Arabidopsis thaliana |
AT5G04040:CDS:3.1 | 912 | Chr5: 1092092-1093003 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04040:exon:3 | 1457 | Chr5: 1090311-1091767 | Arabidopsis thaliana |
AT5G04040:exon:6 | 1113 | Chr5: 1092092-1093204 | Arabidopsis thaliana |
AT5G04040:exon:2 | 1827 | Chr5: 1089941-1091767 | Arabidopsis thaliana |
AT5G04040:exon:4 | 144 | Chr5: 1091851-1091994 | Arabidopsis thaliana |
AT5G04040:exon:5 | 1093 | Chr5: 1092092-1093184 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04040:five_prime_UTR:3 | 35 | Chr5: 1090311-1090345 | Arabidopsis thaliana |
AT5G04040:five_prime_UTR:2 | 405 | Chr5: 1089941-1090345 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G04040 | locus:2150645 | SDP1 | SUGAR-DEPENDENT1 | 3863 | Chr5: 1089342-1093204 | A. thaliana | Patatin-like phospholipase family protein;(source:Araport11) | Encodes a triacylglycerol lipase that is involved in storage lipid breakdown during seed germination. The mutant plant exhibits a much slower rate of postgerminative growth than the wild type. | Patatin-like phospholipase family protein | SDP1 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G04040:three_prime_UTR:2 | 201 | Chr5: 1093004-1093204 | Arabidopsis thaliana |
AT5G04040:three_prime_UTR:1 | 181 | Chr5: 1093004-1093184 | Arabidopsis thaliana |