Genomics
Genome feature
| Region: |
mRNA
|
Length: |
5068
 |
| Location: | Chr5:661936-669124 | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G02880:CDS:1 |
648
|
Chr5: 662643-663290 | Arabidopsis thaliana |
| AT5G02880:CDS:2 |
111
|
Chr5: 663378-663488 | Arabidopsis thaliana |
| AT5G02880:CDS:3 |
117
|
Chr5: 663614-663730 | Arabidopsis thaliana |
| AT5G02880:CDS:4 |
159
|
Chr5: 663824-663982 | Arabidopsis thaliana |
| AT5G02880:CDS:5 |
162
|
Chr5: 664067-664228 | Arabidopsis thaliana |
| AT5G02880:CDS:6 |
150
|
Chr5: 664381-664530 | Arabidopsis thaliana |
| AT5G02880:CDS:7 |
122
|
Chr5: 664624-664745 | Arabidopsis thaliana |
| AT5G02880:CDS:8 |
1093
|
Chr5: 664829-665921 | Arabidopsis thaliana |
| AT5G02880:CDS:9 |
1182
|
Chr5: 666255-667436 | Arabidopsis thaliana |
| AT5G02880:CDS:10 |
231
|
Chr5: 667524-667754 | Arabidopsis thaliana |
| AT5G02880:CDS:11 |
105
|
Chr5: 667842-667946 | Arabidopsis thaliana |
| AT5G02880:CDS:12 |
81
|
Chr5: 668026-668106 | Arabidopsis thaliana |
| AT5G02880:CDS:13 |
69
|
Chr5: 668178-668246 | Arabidopsis thaliana |
| AT5G02880:CDS:14 |
129
|
Chr5: 668345-668473 | Arabidopsis thaliana |
| AT5G02880:CDS:16 |
102
|
Chr5: 668566-668667 | Arabidopsis thaliana |
| AT5G02880:CDS:1.1 |
648
|
Chr5: 662643-663290 | Arabidopsis thaliana |
| AT5G02880:CDS:2.1 |
111
|
Chr5: 663378-663488 | Arabidopsis thaliana |
| AT5G02880:CDS:3.1 |
117
|
Chr5: 663614-663730 | Arabidopsis thaliana |
| AT5G02880:CDS:4.1 |
159
|
Chr5: 663824-663982 | Arabidopsis thaliana |
| AT5G02880:CDS:5.1 |
162
|
Chr5: 664067-664228 | Arabidopsis thaliana |
| AT5G02880:CDS:6.1 |
150
|
Chr5: 664381-664530 | Arabidopsis thaliana |
| AT5G02880:CDS:7.1 |
122
|
Chr5: 664624-664745 | Arabidopsis thaliana |
| AT5G02880:CDS:8.1 |
1093
|
Chr5: 664829-665921 | Arabidopsis thaliana |
| AT5G02880:CDS:9.1 |
1182
|
Chr5: 666255-667436 | Arabidopsis thaliana |
| AT5G02880:CDS:10.1 |
231
|
Chr5: 667524-667754 | Arabidopsis thaliana |
| AT5G02880:CDS:11.1 |
105
|
Chr5: 667842-667946 | Arabidopsis thaliana |
| AT5G02880:CDS:12.1 |
81
|
Chr5: 668026-668106 | Arabidopsis thaliana |
| AT5G02880:CDS:13.1 |
69
|
Chr5: 668178-668246 | Arabidopsis thaliana |
| AT5G02880:CDS:14.1 |
129
|
Chr5: 668345-668473 | Arabidopsis thaliana |
| AT5G02880:CDS:15 |
84
|
Chr5: 668566-668649 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G02880:exon:17 |
559
|
Chr5: 668566-669124 | Arabidopsis thaliana |
| AT5G02880:exon:1 |
245
|
Chr5: 661936-662180 | Arabidopsis thaliana |
| AT5G02880:exon:2 |
685
|
Chr5: 662606-663290 | Arabidopsis thaliana |
| AT5G02880:exon:3 |
111
|
Chr5: 663378-663488 | Arabidopsis thaliana |
| AT5G02880:exon:4 |
117
|
Chr5: 663614-663730 | Arabidopsis thaliana |
| AT5G02880:exon:5 |
159
|
Chr5: 663824-663982 | Arabidopsis thaliana |
| AT5G02880:exon:6 |
162
|
Chr5: 664067-664228 | Arabidopsis thaliana |
| AT5G02880:exon:7 |
150
|
Chr5: 664381-664530 | Arabidopsis thaliana |
| AT5G02880:exon:8 |
122
|
Chr5: 664624-664745 | Arabidopsis thaliana |
| AT5G02880:exon:9 |
1093
|
Chr5: 664829-665921 | Arabidopsis thaliana |
| AT5G02880:exon:10 |
1182
|
Chr5: 666255-667436 | Arabidopsis thaliana |
| AT5G02880:exon:11 |
231
|
Chr5: 667524-667754 | Arabidopsis thaliana |
| AT5G02880:exon:12 |
105
|
Chr5: 667842-667946 | Arabidopsis thaliana |
| AT5G02880:exon:13 |
81
|
Chr5: 668026-668106 | Arabidopsis thaliana |
| AT5G02880:exon:14 |
69
|
Chr5: 668178-668246 | Arabidopsis thaliana |
| AT5G02880:exon:15 |
129
|
Chr5: 668345-668473 | Arabidopsis thaliana |
| AT5G02880:exon:16 |
84
|
Chr5: 668566-668649 | Arabidopsis thaliana |
| AT5G02880:exon:18 |
343
|
Chr5: 668782-669124 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G02880:five_prime_UTR:1 |
245
|
Chr5: 661936-662180 | Arabidopsis thaliana |
| AT5G02880:five_prime_UTR:2 |
37
|
Chr5: 662606-662642 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G02880 | locus:2151306 | UPL4 | ubiquitin-protein ligase 4 |
7189
|
Chr5: 661936-669124 | A. thaliana | ubiquitin-protein ligase 4;(source:Araport11) | encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. The mRNA is cell-to-cell mobile. | ubiquitin-protein ligase 4 | UPL4 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G02880:three_prime_UTR:1 |
457
|
Chr5: 668668-669124 | Arabidopsis thaliana |
| AT5G02880:three_prime_UTR:2 |
277
|
Chr5: 668848-669124 | Arabidopsis thaliana |
