Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1489
 |
| Location: | Chr5:361081-362901 reverse strand | ||
| Transcript | Exons | Introns | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MAN6
AT5G01930.1
1489 |
|
|
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G01930:CDS:5 |
439
|
Chr5: 361189-361627 | Arabidopsis thaliana |
| AT5G01930:CDS:4 |
335
|
Chr5: 361726-362060 | Arabidopsis thaliana |
| AT5G01930:CDS:3 |
195
|
Chr5: 362146-362340 | Arabidopsis thaliana |
| AT5G01930:CDS:2 |
277
|
Chr5: 362413-362689 | Arabidopsis thaliana |
| AT5G01930:CDS:1 |
101
|
Chr5: 362767-362867 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G01920:exon:6 |
148
|
Chr5: 361163-361310 | Arabidopsis thaliana |
| AT5G01930:exon:5 |
547
|
Chr5: 361081-361627 | Arabidopsis thaliana |
| AT5G01930:exon:4 |
335
|
Chr5: 361726-362060 | Arabidopsis thaliana |
| AT5G01930:exon:3 |
195
|
Chr5: 362146-362340 | Arabidopsis thaliana |
| AT5G01930:exon:2 |
277
|
Chr5: 362413-362689 | Arabidopsis thaliana |
| AT5G01930:exon:1 |
135
|
Chr5: 362767-362901 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G01930:five_prime_UTR:1 |
34
|
Chr5: 362868-362901 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT5G01920 | locus:2181067 | STN8 | State transition 8 |
2204
|
Chr5: 359107-361310 | A. thaliana | Protein kinase superfamily protein;(source:Araport11) | Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2. | Protein kinase superfamily protein | STN8 |
| AT5G01930 | locus:2180987 | MAN6 | endo-beta-mannase 6 |
1821
|
Chr5: 361081-362901 | A. thaliana | Glycosyl hydrolase superfamily protein;(source:Araport11) | Encodes a endo-beta-mannanase involved in seed germination. | Glycosyl hydrolase superfamily protein | AtMAN6, MAN6 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT5G01920:three_prime_UTR:3 |
148
|
Chr5: 361163-361310 | Arabidopsis thaliana |
| AT5G01930:three_prime_UTR:1 |
108
|
Chr5: 361081-361188 | Arabidopsis thaliana |
