Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 7, Exons: 7, Five Prime UTR: 1, Gene: 1, Three Prime UTR: 1, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39740:CDS:7 | 109 | Chr4: 18435586-18435694 | Arabidopsis thaliana |
AT4G39740:CDS:6 | 133 | Chr4: 18435776-18435908 | Arabidopsis thaliana |
AT4G39740:CDS:5 | 90 | Chr4: 18435990-18436079 | Arabidopsis thaliana |
AT4G39740:CDS:4 | 219 | Chr4: 18436189-18436407 | Arabidopsis thaliana |
AT4G39740:CDS:3 | 76 | Chr4: 18436486-18436561 | Arabidopsis thaliana |
AT4G39740:CDS:2 | 142 | Chr4: 18436657-18436798 | Arabidopsis thaliana |
AT4G39740:CDS:1 | 62 | Chr4: 18437034-18437095 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39740:exon:7 | 402 | Chr4: 18435293-18435694 | Arabidopsis thaliana |
AT4G39740:exon:6 | 133 | Chr4: 18435776-18435908 | Arabidopsis thaliana |
AT4G39740:exon:5 | 90 | Chr4: 18435990-18436079 | Arabidopsis thaliana |
AT4G39740:exon:4 | 219 | Chr4: 18436189-18436407 | Arabidopsis thaliana |
AT4G39740:exon:3 | 76 | Chr4: 18436486-18436561 | Arabidopsis thaliana |
AT4G39740:exon:2 | 142 | Chr4: 18436657-18436798 | Arabidopsis thaliana |
AT4G39740:exon:1 | 225 | Chr4: 18437034-18437258 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39740:five_prime_UTR:1 | 163 | Chr4: 18437096-18437258 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G39740 | locus:2135232 | HCC2 | homologue of copper chaperone SCO1 2 | 1966 | Chr4: 18435293-18437258 | A. thaliana | Thioredoxin superfamily protein;(source:Araport11) | Encodes HCC2, one of the two Arabidopsis genes (HCC1 and HCC2) resulting from a duplication with homology to the SCO proteins involved in copper insertion during cytochrome c oxidase (COX) assembly in other organisms. HCC2, which lacks the cysteines and histidine putatively involved in copper binding, functions in copper sensing and redox homeostasis. | Thioredoxin superfamily protein | HCC2 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39740:three_prime_UTR:1 | 293 | Chr4: 18435293-18435585 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE89385 | 1086 | Chr4: 18434274-18435359 | Arabidopsis thaliana |
AT4TE89390 | 159 | Chr4: 18435370-18435528 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE89385:transposon_fragment:1 | 1086 | Chr4: 18434274-18435359 | Arabidopsis thaliana |
AT4TE89390:transposon_fragment:1 | 159 | Chr4: 18435370-18435528 | Arabidopsis thaliana |