Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNAs: 2, CDSs: 11, Exons: 12, Five Prime UTRs: 2, Genes: 3, mRNAs: 2, Three Prime UTRs: 2
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G31398.1 | 921 | Chr4: 15238554-15239474 |
AT4G31398.2 | 578 | Chr4: 15238584-15239282 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G31400:CDS:1 | 155 | Chr4: 15237411-15237565 | Arabidopsis thaliana |
AT4G31400:CDS:2 | 235 | Chr4: 15237768-15238002 | Arabidopsis thaliana |
AT4G31400:CDS:3 | 96 | Chr4: 15238101-15238196 | Arabidopsis thaliana |
AT4G31400:CDS:4 | 69 | Chr4: 15238278-15238346 | Arabidopsis thaliana |
AT4G31400:CDS:5 | 329 | Chr4: 15238685-15239013 | Arabidopsis thaliana |
AT4G31400:CDS:7 | 154 | Chr4: 15239113-15239266 | Arabidopsis thaliana |
AT4G31400:CDS:1.1 | 155 | Chr4: 15237411-15237565 | Arabidopsis thaliana |
AT4G31400:CDS:2.1 | 235 | Chr4: 15237768-15238002 | Arabidopsis thaliana |
AT4G31400:CDS:3.1 | 96 | Chr4: 15238101-15238196 | Arabidopsis thaliana |
AT4G31400:CDS:4.1 | 69 | Chr4: 15238278-15238346 | Arabidopsis thaliana |
AT4G31400:CDS:6 | 372 | Chr4: 15238685-15239056 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G31390:exon:19 | 494 | Chr4: 15236700-15237193 | Arabidopsis thaliana |
AT4G31400:exon:1 | 375 | Chr4: 15237191-15237565 | Arabidopsis thaliana |
AT4G31400:exon:6 | 329 | Chr4: 15238685-15239013 | Arabidopsis thaliana |
AT4G31400:exon:8 | 211 | Chr4: 15239113-15239323 | Arabidopsis thaliana |
AT4G31400:exon:2 | 373 | Chr4: 15237193-15237565 | Arabidopsis thaliana |
AT4G31400:exon:3 | 235 | Chr4: 15237768-15238002 | Arabidopsis thaliana |
AT4G31400:exon:4 | 96 | Chr4: 15238101-15238196 | Arabidopsis thaliana |
AT4G31400:exon:5 | 69 | Chr4: 15238278-15238346 | Arabidopsis thaliana |
AT4G31400:exon:7 | 372 | Chr4: 15238685-15239056 | Arabidopsis thaliana |
AT4G31398:exon:3 | 921 | Chr4: 15238554-15239474 | Arabidopsis thaliana |
AT4G31398:exon:2 | 260 | Chr4: 15238584-15238843 | Arabidopsis thaliana |
AT4G31398:exon:1 | 318 | Chr4: 15238965-15239282 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G31400:five_prime_UTR:1 | 220 | Chr4: 15237191-15237410 | Arabidopsis thaliana |
AT4G31400:five_prime_UTR:2 | 218 | Chr4: 15237193-15237410 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G31390 | locus:2128116 | ACDO1 | ABC1-like kinase related to chlorophyll degradation and oxidative stress 1 | 4152 | Chr4: 15233042-15237193 | A. thaliana | Protein kinase superfamily protein;(source:Araport11) | NULL | Protein kinase superfamily protein | ABC1K1, ACDO1, AtACDO1, PGR6 |
AT4G31400 | locus:2128126 | CTF7 | 2133 | Chr4: 15237191-15239323 | A. thaliana | protein CTF7;(source:Araport11) | Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development. Inactivation of CTF7 results in severe defects in reproduction and vegetative growth. | damaged DNA binding;DNA-directed DNA polymerases | AtCTF7, CTF7, ECO1 | |
AT4G31398 | locus:4010713920 | AT4G31398 | 921 | Chr4: 15238554-15239474 | A. thaliana | Natural antisense transcript overlaps with AT4G31400;(source:Araport11) | NULL | other RNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G31390.1 | 2562 | Chr4: 15233042-15237193 |
AT4G31400.2 | 1145 | Chr4: 15237193-15239056 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G31390:three_prime_UTR:3 | 429 | Chr4: 15236765-15237193 | Arabidopsis thaliana |
AT4G31400:three_prime_UTR:1 | 57 | Chr4: 15239267-15239323 | Arabidopsis thaliana |