Genomics
Transcript | Exons | Introns | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SIC
AT4G24500.1
1550 |
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SIC
AT4G24500.3
1464 |
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SIC
AT4G24500.2
1345 |
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Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24500:CDS:2 | 313 | Chr4: 12658732-12659044 | Arabidopsis thaliana |
AT4G24500:CDS:4 | 647 | Chr4: 12659565-12660211 | Arabidopsis thaliana |
AT4G24500:CDS:2.1 | 313 | Chr4: 12658732-12659044 | Arabidopsis thaliana |
AT4G24500:CDS:4.1 | 647 | Chr4: 12659565-12660211 | Arabidopsis thaliana |
AT4G24500:CDS:1 | 173 | Chr4: 12658732-12658904 | Arabidopsis thaliana |
AT4G24500:CDS:3 | 53 | Chr4: 12658992-12659044 | Arabidopsis thaliana |
AT4G24500:CDS:4.2 | 647 | Chr4: 12659565-12660211 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24500:exon:1 | 124 | Chr4: 12658433-12658556 | Arabidopsis thaliana |
AT4G24500:exon:9 | 1103 | Chr4: 12659565-12660667 | Arabidopsis thaliana |
AT4G24500:exon:2 | 183 | Chr4: 12658444-12658626 | Arabidopsis thaliana |
AT4G24500:exon:5 | 323 | Chr4: 12658722-12659044 | Arabidopsis thaliana |
AT4G24500:exon:7 | 958 | Chr4: 12659565-12660522 | Arabidopsis thaliana |
AT4G24500:exon:3 | 68 | Chr4: 12658489-12658556 | Arabidopsis thaliana |
AT4G24500:exon:4 | 183 | Chr4: 12658722-12658904 | Arabidopsis thaliana |
AT4G24500:exon:6 | 53 | Chr4: 12658992-12659044 | Arabidopsis thaliana |
AT4G24500:exon:8 | 1041 | Chr4: 12659565-12660605 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24500:five_prime_UTR:1 | 124 | Chr4: 12658433-12658556 | Arabidopsis thaliana |
AT4G24500:five_prime_UTR:2 | 183 | Chr4: 12658444-12658626 | Arabidopsis thaliana |
AT4G24500:five_prime_UTR:3 | 68 | Chr4: 12658489-12658556 | Arabidopsis thaliana |
AT4G24500:five_prime_UTR:4 | 10 | Chr4: 12658722-12658731 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G24500 | locus:2121870 | SIC | SICKLE | 2235 | Chr4: 12658433-12660667 | A. thaliana | hydroxyproline-rich glycoprotein family protein;(source:Araport11) | Encodes a proline-rich protein SICKLE (SIC). Required for development and abiotic stress tolerance. Involved in microRNA biogenesis. It is involved in mRNA splicing. It is a single copy gene in Arabidopsis and likely specific to higher plants. Along with RCN1, it functions in regulating auxin transport processes in part by regulating the recycling of PIN1 and PIN2 auxin transporters. It is required for circadian clock temperature responses. | hydroxyproline-rich glycoprotein family protein | RON3, SIC, WARP2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G24500.3 | 1464 | Chr4: 12658444-12660522 |
AT4G24500.2 | 1345 | Chr4: 12658489-12660605 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24500:three_prime_UTR:3 | 456 | Chr4: 12660212-12660667 | Arabidopsis thaliana |
AT4G24500:three_prime_UTR:1 | 311 | Chr4: 12660212-12660522 | Arabidopsis thaliana |
AT4G24500:three_prime_UTR:2 | 394 | Chr4: 12660212-12660605 | Arabidopsis thaliana |