External Links
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Genomics
Gene models -
Gene models
No results
Overlapping Features
Genome features that overlap coordinates of this Pseudogene
CDSs: 16, Exons: 17, Five Prime UTRs: 2, Genes: 3, mRNAs: 3, Pseudogenic Exons: 2, Pseudogenic Transcript: 1, Three Prime UTR: 1, Transposable Elements: 9, Transposon Fragments: 9
CDSs
Exons
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G10210:five_prime_UTR:1 | 30 | Chr4: 6357052-6357081 | Arabidopsis thaliana |
AT4G10210:five_prime_UTR:2 | 4 | Chr4: 6357214-6357217 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G10210 | locus:2122729 | AT4G10210 | 3326 | Chr4: 6357052-6360377 | A. thaliana | transmembrane protein, putative (DUF239);(source:Araport11) | NULL | Protein of Unknown Function (DUF239) | ||
AT4G10220 | locus:2122739 | AT4G10220 | 2891 | Chr4: 6362189-6365079 | A. thaliana | NEP-interacting protein, putative (DUF239);(source:Araport11) | NULL | Protein of Unknown Function (DUF239) | ||
AT4G10230 | locus:2122744 | AT4G10230 | 925 | Chr4: 6366261-6367185 | A. thaliana | no-apical-meristem-associated carboxy-terminal domain protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G10210.1 | 1337 | Chr4: 6357052-6360377 |
AT4G10220.1 | 1203 | Chr4: 6362189-6365079 |
AT4G10230.1 | 822 | Chr4: 6366261-6367185 |
Pseudogenic Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G10201:pseudogenic_exon:1 | 123 | Chr4: 6355739-6355861 | Arabidopsis thaliana |
AT4G10201:pseudogenic_exon:2 | 576 | Chr4: 6367975-6368550 | Arabidopsis thaliana |
Pseudogenic Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G10201.1 | 12812 | Chr4: 6355739-6368550 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G10210:three_prime_UTR:1 | 121 | Chr4: 6360257-6360377 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE27075 | 1094 | Chr4: 6356118-6357211 | Arabidopsis thaliana |
AT4TE27080 | 309 | Chr4: 6357355-6357663 | Arabidopsis thaliana |
AT4TE27085 | 517 | Chr4: 6357664-6358180 | Arabidopsis thaliana |
AT4TE27090 | 194 | Chr4: 6359735-6359928 | Arabidopsis thaliana |
AT4TE27095 | 1252 | Chr4: 6360805-6362056 | Arabidopsis thaliana |
AT4TE27100 | 104 | Chr4: 6362057-6362160 | Arabidopsis thaliana |
AT4TE27105 | 43 | Chr4: 6362161-6362203 | Arabidopsis thaliana |
AT4TE27110 | 711 | Chr4: 6362488-6363198 | Arabidopsis thaliana |
AT4TE27130 | 426 | Chr4: 6367134-6367559 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE27075:transposon_fragment:1 | 1094 | Chr4: 6356118-6357211 | Arabidopsis thaliana |
AT4TE27080:transposon_fragment:1 | 309 | Chr4: 6357355-6357663 | Arabidopsis thaliana |
AT4TE27085:transposon_fragment:1 | 517 | Chr4: 6357664-6358180 | Arabidopsis thaliana |
AT4TE27090:transposon_fragment:1 | 194 | Chr4: 6359735-6359928 | Arabidopsis thaliana |
AT4TE27095:transposon_fragment:1 | 1252 | Chr4: 6360805-6362056 | Arabidopsis thaliana |
AT4TE27100:transposon_fragment:1 | 104 | Chr4: 6362057-6362160 | Arabidopsis thaliana |
AT4TE27105:transposon_fragment:1 | 43 | Chr4: 6362161-6362203 | Arabidopsis thaliana |
AT4TE27110:transposon_fragment:1 | 711 | Chr4: 6362488-6363198 | Arabidopsis thaliana |
AT4TE27130:transposon_fragment:1 | 426 | Chr4: 6367134-6367559 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...