Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1736
 |
| Location: | Chr4:6270241-6273442 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 13, Exons: 14, Five Prime UTR: 1, Genes: 2, mRNA: 1, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4G10030:CDS:13 |
69
|
Chr4: 6270490-6270558 | Arabidopsis thaliana |
| AT4G10030:CDS:12 |
172
|
Chr4: 6270656-6270827 | Arabidopsis thaliana |
| AT4G10030:CDS:11 |
113
|
Chr4: 6270916-6271028 | Arabidopsis thaliana |
| AT4G10030:CDS:10 |
66
|
Chr4: 6271157-6271222 | Arabidopsis thaliana |
| AT4G10030:CDS:9 |
102
|
Chr4: 6271407-6271508 | Arabidopsis thaliana |
| AT4G10030:CDS:8 |
53
|
Chr4: 6271585-6271637 | Arabidopsis thaliana |
| AT4G10030:CDS:7 |
58
|
Chr4: 6271729-6271786 | Arabidopsis thaliana |
| AT4G10030:CDS:6 |
99
|
Chr4: 6271876-6271974 | Arabidopsis thaliana |
| AT4G10030:CDS:5 |
44
|
Chr4: 6272049-6272092 | Arabidopsis thaliana |
| AT4G10030:CDS:4 |
91
|
Chr4: 6272403-6272493 | Arabidopsis thaliana |
| AT4G10030:CDS:3 |
27
|
Chr4: 6272649-6272675 | Arabidopsis thaliana |
| AT4G10030:CDS:2 |
135
|
Chr4: 6272762-6272896 | Arabidopsis thaliana |
| AT4G10030:CDS:1 |
114
|
Chr4: 6272985-6273098 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4G10020:exon:6 |
660
|
Chr4: 6269775-6270434 | Arabidopsis thaliana |
| AT4G10030:exon:13 |
318
|
Chr4: 6270241-6270558 | Arabidopsis thaliana |
| AT4G10030:exon:12 |
172
|
Chr4: 6270656-6270827 | Arabidopsis thaliana |
| AT4G10030:exon:11 |
113
|
Chr4: 6270916-6271028 | Arabidopsis thaliana |
| AT4G10030:exon:10 |
66
|
Chr4: 6271157-6271222 | Arabidopsis thaliana |
| AT4G10030:exon:9 |
102
|
Chr4: 6271407-6271508 | Arabidopsis thaliana |
| AT4G10030:exon:8 |
53
|
Chr4: 6271585-6271637 | Arabidopsis thaliana |
| AT4G10030:exon:7 |
58
|
Chr4: 6271729-6271786 | Arabidopsis thaliana |
| AT4G10030:exon:6 |
99
|
Chr4: 6271876-6271974 | Arabidopsis thaliana |
| AT4G10030:exon:5 |
44
|
Chr4: 6272049-6272092 | Arabidopsis thaliana |
| AT4G10030:exon:4 |
91
|
Chr4: 6272403-6272493 | Arabidopsis thaliana |
| AT4G10030:exon:3 |
27
|
Chr4: 6272649-6272675 | Arabidopsis thaliana |
| AT4G10030:exon:2 |
135
|
Chr4: 6272762-6272896 | Arabidopsis thaliana |
| AT4G10030:exon:1 |
458
|
Chr4: 6272985-6273442 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4G10030:five_prime_UTR:1 |
344
|
Chr4: 6273099-6273442 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT4G10020 | locus:2140553 | HSD5 | hydroxysteroid dehydrogenase 5 |
2162
|
Chr4: 6268273-6270434 | A. thaliana | hydroxysteroid dehydrogenase 5;(source:Araport11) | Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5. | hydroxysteroid dehydrogenase 5 | AtHSD5, HSD5 |
| AT4G10030 | locus:2140563 | AT4G10030 |
3202
|
Chr4: 6270241-6273442 | A. thaliana | alpha/beta-Hydrolases superfamily protein;(source:Araport11) | Alpha/beta hydrolase domain containing protein involved in lipid biosynthesis. | alpha/beta-Hydrolases superfamily protein | ABHD11 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4G10020:three_prime_UTR:1 |
255
|
Chr4: 6270180-6270434 | Arabidopsis thaliana |
| AT4G10030:three_prime_UTR:1 |
249
|
Chr4: 6270241-6270489 | Arabidopsis thaliana |
Transposable Elements
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4TE26660 |
217
|
Chr4: 6273404-6273620 | Arabidopsis thaliana |
Transposon Fragments
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT4TE26660:transposon_fragment:1 |
217
|
Chr4: 6273404-6273620 | Arabidopsis thaliana |
