Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs: 33, Exons: 16, Five Prime UTRs: 4, Genes: 2, mRNAs: 7, Three Prime UTRs: 9, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08590:CDS:6 | 130 | Chr4: 5464604-5464733 | Arabidopsis thaliana |
AT4G08590:CDS:3 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:CDS:2 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:CDS:1 | 363 | Chr4: 5466273-5466635 | Arabidopsis thaliana |
AT4G08590:CDS:11 | 144 | Chr4: 5464085-5464228 | Arabidopsis thaliana |
AT4G08590:CDS:9 | 103 | Chr4: 5464322-5464424 | Arabidopsis thaliana |
AT4G08590:CDS:7 | 65 | Chr4: 5464490-5464554 | Arabidopsis thaliana |
AT4G08590:CDS:5 | 100 | Chr4: 5464634-5464733 | Arabidopsis thaliana |
AT4G08590:CDS:3.1 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:CDS:2.1 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:CDS:1.1 | 363 | Chr4: 5466273-5466635 | Arabidopsis thaliana |
AT4G08590:CDS:8 | 105 | Chr4: 5464450-5464554 | Arabidopsis thaliana |
AT4G08590:CDS:5.1 | 100 | Chr4: 5464634-5464733 | Arabidopsis thaliana |
AT4G08590:CDS:3.2 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:CDS:2.2 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:CDS:1.2 | 363 | Chr4: 5466273-5466635 | Arabidopsis thaliana |
AT4G08590:CDS:6.1 | 130 | Chr4: 5464604-5464733 | Arabidopsis thaliana |
AT4G08590:CDS:3.3 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:CDS:2.3 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:CDS:1.3 | 363 | Chr4: 5466273-5466635 | Arabidopsis thaliana |
AT4G08590:CDS:10 | 127 | Chr4: 5464298-5464424 | Arabidopsis thaliana |
AT4G08590:CDS:7.1 | 65 | Chr4: 5464490-5464554 | Arabidopsis thaliana |
AT4G08590:CDS:5.2 | 100 | Chr4: 5464634-5464733 | Arabidopsis thaliana |
AT4G08590:CDS:3.4 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:CDS:2.4 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:CDS:1.4 | 363 | Chr4: 5466273-5466635 | Arabidopsis thaliana |
AT4G08590:CDS:11.1 | 144 | Chr4: 5464085-5464228 | Arabidopsis thaliana |
AT4G08590:CDS:9.1 | 103 | Chr4: 5464322-5464424 | Arabidopsis thaliana |
AT4G08590:CDS:7.2 | 65 | Chr4: 5464490-5464554 | Arabidopsis thaliana |
AT4G08590:CDS:5.3 | 100 | Chr4: 5464634-5464733 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:exon:4 | 301 | Chr4: 5463607-5463907 | Arabidopsis thaliana |
AT4G08590:exon:2 | 459 | Chr4: 5466273-5466731 | Arabidopsis thaliana |
AT4G08590:exon:15 | 435 | Chr4: 5463794-5464228 | Arabidopsis thaliana |
AT4G08590:exon:11 | 233 | Chr4: 5464322-5464554 | Arabidopsis thaliana |
AT4G08590:exon:1 | 475 | Chr4: 5466273-5466747 | Arabidopsis thaliana |
AT4G08590:exon:9 | 244 | Chr4: 5464490-5464733 | Arabidopsis thaliana |
AT4G08590:exon:14 | 540 | Chr4: 5463885-5464424 | Arabidopsis thaliana |
AT4G08590:exon:6 | 99 | Chr4: 5464908-5465006 | Arabidopsis thaliana |
AT4G08590:exon:3 | 438 | Chr4: 5466273-5466710 | Arabidopsis thaliana |
AT4G08590:exon:13 | 329 | Chr4: 5463900-5464228 | Arabidopsis thaliana |
AT4G08590:exon:12 | 103 | Chr4: 5464322-5464424 | Arabidopsis thaliana |
AT4G08590:exon:10 | 65 | Chr4: 5464490-5464554 | Arabidopsis thaliana |
AT4G08590:exon:8 | 100 | Chr4: 5464634-5464733 | Arabidopsis thaliana |
AT4G08590:exon:7 | 96 | Chr4: 5464908-5465003 | Arabidopsis thaliana |
AT4G08590:exon:5 | 524 | Chr4: 5465152-5465675 | Arabidopsis thaliana |
AT4G08590:exon:4 | 398 | Chr4: 5466273-5466670 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08590:five_prime_UTR:2 | 96 | Chr4: 5466636-5466731 | Arabidopsis thaliana |
AT4G08590:five_prime_UTR:1 | 112 | Chr4: 5466636-5466747 | Arabidopsis thaliana |
AT4G08590:five_prime_UTR:3 | 75 | Chr4: 5466636-5466710 | Arabidopsis thaliana |
AT4G08590:five_prime_UTR:4 | 35 | Chr4: 5466636-5466670 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G08580 | locus:2133554 | AT4G08580 | 2510 | Chr4: 5461398-5463907 | A. thaliana | microfibrillar-associated protein-like protein;(source:Araport11) | NULL | microfibrillar-associated protein-related | ||
AT4G08590 | locus:2138591 | ORTHL | ORTHRUS-like | 2954 | Chr4: 5463794-5466747 | A. thaliana | ORTHRUS-like protein;(source:Araport11) | NULL | ORTHRUS-like | ORL1, ORTHL, VIM6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G08580.1 | 1680 | Chr4: 5461398-5463907 |
AT4G08580.2 | 2253 | Chr4: 5461434-5463907 |
AT4G08590.4 | 1864 | Chr4: 5463794-5466731 |
AT4G08590.3 | 1866 | Chr4: 5463794-5466747 |
AT4G08590.5 | 1845 | Chr4: 5463885-5466710 |
AT4G08590.6 | 1766 | Chr4: 5463885-5466710 |
AT4G08590.2 | 1615 | Chr4: 5463900-5466670 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G08580:three_prime_UTR:1 | 189 | Chr4: 5463719-5463907 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:3 | 103 | Chr4: 5464322-5464424 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:8 | 291 | Chr4: 5463794-5464084 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:7 | 435 | Chr4: 5463794-5464228 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:2 | 128 | Chr4: 5464322-5464449 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:5 | 540 | Chr4: 5463885-5464424 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:1 | 114 | Chr4: 5464490-5464603 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:6 | 413 | Chr4: 5463885-5464297 | Arabidopsis thaliana |
AT4G08590:three_prime_UTR:4 | 185 | Chr4: 5463900-5464084 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE22895 | 543 | Chr4: 5466732-5467274 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE22895:transposon_fragment:1 | 543 | Chr4: 5466732-5467274 | Arabidopsis thaliana |