Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposableElement
Exons: 2, Gene: 1, Intergenic Regions: 2, mRNAs: 2, Three Prime UTR: 1, Transposable Element Gene: 1, Transposon Fragments: 3
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G07825:exon:1 | 1499 | Chr4: 4643840-4645338 | Arabidopsis thaliana |
AT4G07830:exon:1 | 2492 | Chr4: 4645645-4648136 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G07825 | locus:1005716371 | AT4G07825 | 1592 | Chr4: 4643747-4645338 | A. thaliana | transmembrane protein;(source:Araport11) | NULL | NULL |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr4_4645339..4645644 | 306 | Chr4: 4645339-4645644 | Arabidopsis thaliana |
intergenic_region_chrChr4_4648137..4652506 | 4370 | Chr4: 4648137-4652506 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G07825.1 | 1499 | Chr4: 4643747-4645338 |
AT4G07830.1 | 2492 | Chr4: 4645645-4648136 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G07825:three_prime_UTR:1 | 752 | Chr4: 4644587-4645338 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G07830 | locus:2126174 | AT4G07830 | 2492 | Chr4: 4645645-4648136 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family, has a 6.3e-159 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE19530:transposon_fragment:3 | 661 | Chr4: 4645310-4645970 | Arabidopsis thaliana |
AT4TE19530:transposon_fragment:2 | 2201 | Chr4: 4645962-4648162 | Arabidopsis thaliana |
AT4TE19530:transposon_fragment:1 | 661 | Chr4: 4648156-4648816 | Arabidopsis thaliana |