Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 7, Exons: 8, Five Prime UTR: 1, Genes: 2, Pseudogene: 1, Pseudogenic Exon: 1, Pseudogenic Transcript: 1, Three Prime UTR: 1, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05060:CDS:7 | 57 | Chr4: 2590245-2590301 | Arabidopsis thaliana |
AT4G05060:CDS:6 | 123 | Chr4: 2590427-2590549 | Arabidopsis thaliana |
AT4G05060:CDS:5 | 78 | Chr4: 2590684-2590761 | Arabidopsis thaliana |
AT4G05060:CDS:4 | 119 | Chr4: 2590872-2590990 | Arabidopsis thaliana |
AT4G05060:CDS:3 | 82 | Chr4: 2591108-2591189 | Arabidopsis thaliana |
AT4G05060:CDS:2 | 71 | Chr4: 2591277-2591347 | Arabidopsis thaliana |
AT4G05060:CDS:1 | 334 | Chr4: 2591667-2592000 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05060:exon:7 | 237 | Chr4: 2590065-2590301 | Arabidopsis thaliana |
AT4G05060:exon:6 | 123 | Chr4: 2590427-2590549 | Arabidopsis thaliana |
AT4G05060:exon:5 | 78 | Chr4: 2590684-2590761 | Arabidopsis thaliana |
AT4G05060:exon:4 | 119 | Chr4: 2590872-2590990 | Arabidopsis thaliana |
AT4G05060:exon:3 | 82 | Chr4: 2591108-2591189 | Arabidopsis thaliana |
AT4G05060:exon:2 | 71 | Chr4: 2591277-2591347 | Arabidopsis thaliana |
AT4G05060:exon:1 | 875 | Chr4: 2591667-2592541 | Arabidopsis thaliana |
AT4G05065:exon:1 | 277 | Chr4: 2591712-2591988 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05060:five_prime_UTR:1 | 541 | Chr4: 2592001-2592541 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G05060 | locus:2138401 | AT4G05060 | 2477 | Chr4: 2590065-2592541 | A. thaliana | PapD-like superfamily protein;(source:Araport11) | NULL | PapD-like superfamily protein | ||
AT4G05065 | AT4G05065 | 277 | Chr4: 2591712-2591988 | A. thaliana | Natural antisense transcript overlaps with AT4G05060;(source:Araport11) | NULL |
Pseudogenes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G05053 | locus:4515103345 | AT4G05053 | 461 | Chr4: 2589637-2590097 | A. thaliana | pseudogene of arginine-rich cyclin 1;(source:Araport11) | pseudogene of ATRCY1 (arginine-rich cyclin) | NULL |
Pseudogenic Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05053:pseudogenic_exon:1 | 461 | Chr4: 2589637-2590097 | Arabidopsis thaliana |
Pseudogenic Transcripts
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G05053.1 | 461 | Chr4: 2589637-2590097 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G05060:three_prime_UTR:1 | 180 | Chr4: 2590065-2590244 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE12140 | 939 | Chr4: 2592231-2593169 | Arabidopsis thaliana |
AT4TE12145 | 404 | Chr4: 2592343-2592746 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE12140:transposon_fragment:2 | 112 | Chr4: 2592231-2592342 | Arabidopsis thaliana |
AT4TE12145:transposon_fragment:1 | 404 | Chr4: 2592343-2592746 | Arabidopsis thaliana |