Genomics
Overlapping Features
Genome features that overlap coordinates of this TransposonFragment
Exons: 2, Intergenic Region: 1, mRNAs: 2, Transposable Element: 1, Transposable Element Genes: 2, Transposon Fragment: 1
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G03775:exon:1 | 2178 | Chr4: 1680653-1682830 | Arabidopsis thaliana |
AT4G03780:exon:1 | 2094 | Chr4: 1683483-1685576 | Arabidopsis thaliana |
Intergenic Regions
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
intergenic_region_chrChr4_1682831..1683482 | 652 | Chr4: 1682831-1683482 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G03775.1 | 2178 | Chr4: 1680653-1682830 |
AT4G03780.1 | 2094 | Chr4: 1683483-1685576 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE08455 | 2434 | Chr4: 1682027-1684460 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G03775 | locus:504955246 | AT4G03775 | 2178 | Chr4: 1680653-1682830 | A. thaliana | transposable_element_gene;(source:Araport11);CACTA-like transposase family (En/Spm), has a 9.9e-25 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like);(source:TAIR10) | NULL | transposable element gene | ||
AT4G03780 | locus:2139925 | AT4G03780 | 2094 | Chr4: 1683483-1685576 | A. thaliana | transposable_element_gene;(source:Araport11);gypsy-like retrotransposon family (Athila), has a 1.9e-59 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE08455:transposon_fragment:1 | 248 | Chr4: 1684213-1684460 | Arabidopsis thaliana |