Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
Antisense lncRNA: 1, CDSs: 15, Exons: 12, Five Prime UTRs: 5, Genes: 3, mRNAs: 3, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G61380:CDS:5 | 623 | Chr3: 22708769-22709391 | Arabidopsis thaliana |
AT3G61380:CDS:4 | 190 | Chr3: 22709474-22709663 | Arabidopsis thaliana |
AT3G61380:CDS:3 | 122 | Chr3: 22709751-22709872 | Arabidopsis thaliana |
AT3G61380:CDS:2 | 1083 | Chr3: 22709966-22711048 | Arabidopsis thaliana |
AT3G61380:CDS:1 | 139 | Chr3: 22711141-22711279 | Arabidopsis thaliana |
AT3G61380:CDS:5.1 | 623 | Chr3: 22708769-22709391 | Arabidopsis thaliana |
AT3G61380:CDS:4.1 | 190 | Chr3: 22709474-22709663 | Arabidopsis thaliana |
AT3G61380:CDS:3.1 | 122 | Chr3: 22709751-22709872 | Arabidopsis thaliana |
AT3G61380:CDS:2.1 | 1083 | Chr3: 22709966-22711048 | Arabidopsis thaliana |
AT3G61380:CDS:1.1 | 139 | Chr3: 22711141-22711279 | Arabidopsis thaliana |
AT3G61380:CDS:5.2 | 623 | Chr3: 22708769-22709391 | Arabidopsis thaliana |
AT3G61380:CDS:4.2 | 190 | Chr3: 22709474-22709663 | Arabidopsis thaliana |
AT3G61380:CDS:3.2 | 122 | Chr3: 22709751-22709872 | Arabidopsis thaliana |
AT3G61380:CDS:2.2 | 1083 | Chr3: 22709966-22711048 | Arabidopsis thaliana |
AT3G61380:CDS:1.2 | 139 | Chr3: 22711141-22711279 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G61370:exon:8 | 364 | Chr3: 22708146-22708509 | Arabidopsis thaliana |
AT3G61380:exon:10 | 910 | Chr3: 22708482-22709391 | Arabidopsis thaliana |
AT3G61380:exon:3 | 292 | Chr3: 22711559-22711850 | Arabidopsis thaliana |
AT3G61380:exon:1 | 116 | Chr3: 22711962-22712077 | Arabidopsis thaliana |
AT3G61380:exon:4 | 442 | Chr3: 22711141-22711582 | Arabidopsis thaliana |
AT3G61380:exon:9 | 623 | Chr3: 22708769-22709391 | Arabidopsis thaliana |
AT3G61380:exon:8 | 190 | Chr3: 22709474-22709663 | Arabidopsis thaliana |
AT3G61380:exon:7 | 122 | Chr3: 22709751-22709872 | Arabidopsis thaliana |
AT3G61380:exon:6 | 1083 | Chr3: 22709966-22711048 | Arabidopsis thaliana |
AT3G61380:exon:5 | 152 | Chr3: 22711141-22711292 | Arabidopsis thaliana |
AT3G61380:exon:2 | 305 | Chr3: 22711559-22711863 | Arabidopsis thaliana |
AT3G09655:exon:1 | 371 | Chr3: 22710120-22710490 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G61380:five_prime_UTR:3 | 292 | Chr3: 22711559-22711850 | Arabidopsis thaliana |
AT3G61380:five_prime_UTR:1 | 116 | Chr3: 22711962-22712077 | Arabidopsis thaliana |
AT3G61380:five_prime_UTR:4 | 303 | Chr3: 22711280-22711582 | Arabidopsis thaliana |
AT3G61380:five_prime_UTR:5 | 13 | Chr3: 22711280-22711292 | Arabidopsis thaliana |
AT3G61380:five_prime_UTR:2 | 305 | Chr3: 22711559-22711863 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G61370 | locus:2098951 | AT3G61370 | 2268 | Chr3: 22706242-22708509 | A. thaliana | pre-mRNA-splicing factor CWC22-like protein (DUF3245);(source:Araport11) | NULL | Protein of unknown function (DUF3245) | ||
AT3G61380 | locus:2098961 | TRM14 | TON1 Recruiting Motif 14 | 3596 | Chr3: 22708482-22712077 | A. thaliana | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein;(source:Araport11) | NULL | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | TRM14 |
AT3G09655 | AT3G09655 | 371 | Chr3: 22710120-22710490 | A. thaliana | Natural antisense transcript overlaps with AT3G61380;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G61370.1 | 695 | Chr3: 22706242-22708509 |
AT3G61380.3 | 2460 | Chr3: 22708769-22711582 |
AT3G61380.2 | 2475 | Chr3: 22708769-22711863 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G61370:three_prime_UTR:1 | 129 | Chr3: 22708381-22708509 | Arabidopsis thaliana |
AT3G61380:three_prime_UTR:1 | 287 | Chr3: 22708482-22708768 | Arabidopsis thaliana |