Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1654
 |
| Location: | Chr3:20845674-20848695 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G56190:CDS:12 |
81
|
Chr3: 20846119-20846199 | Arabidopsis thaliana |
| AT3G56190:CDS:11 |
81
|
Chr3: 20846289-20846369 | Arabidopsis thaliana |
| AT3G56190:CDS:10 |
48
|
Chr3: 20846458-20846505 | Arabidopsis thaliana |
| AT3G56190:CDS:9 |
160
|
Chr3: 20846603-20846762 | Arabidopsis thaliana |
| AT3G56190:CDS:8 |
152
|
Chr3: 20846993-20847144 | Arabidopsis thaliana |
| AT3G56190:CDS:7 |
80
|
Chr3: 20847376-20847455 | Arabidopsis thaliana |
| AT3G56190:CDS:6 |
69
|
Chr3: 20847551-20847619 | Arabidopsis thaliana |
| AT3G56190:CDS:4 |
50
|
Chr3: 20847710-20847759 | Arabidopsis thaliana |
| AT3G56190:CDS:2 |
2
|
Chr3: 20848212-20848213 | Arabidopsis thaliana |
| AT3G56190:CDS:12.1 |
81
|
Chr3: 20846119-20846199 | Arabidopsis thaliana |
| AT3G56190:CDS:11.1 |
81
|
Chr3: 20846289-20846369 | Arabidopsis thaliana |
| AT3G56190:CDS:10.1 |
48
|
Chr3: 20846458-20846505 | Arabidopsis thaliana |
| AT3G56190:CDS:9.1 |
160
|
Chr3: 20846603-20846762 | Arabidopsis thaliana |
| AT3G56190:CDS:8.1 |
152
|
Chr3: 20846993-20847144 | Arabidopsis thaliana |
| AT3G56190:CDS:7.1 |
80
|
Chr3: 20847376-20847455 | Arabidopsis thaliana |
| AT3G56190:CDS:5 |
73
|
Chr3: 20847551-20847623 | Arabidopsis thaliana |
| AT3G56190:CDS:3 |
50
|
Chr3: 20847710-20847759 | Arabidopsis thaliana |
| AT3G56190:CDS:1 |
145
|
Chr3: 20848212-20848356 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G56180:exon:5 |
345
|
Chr3: 20845414-20845758 | Arabidopsis thaliana |
| AT3G56180:exon:6 |
267
|
Chr3: 20845426-20845692 | Arabidopsis thaliana |
| AT3G56190:exon:5 |
69
|
Chr3: 20847551-20847619 | Arabidopsis thaliana |
| AT3G56190:exon:2 |
323
|
Chr3: 20848212-20848534 | Arabidopsis thaliana |
| AT3G56190:exon:11 |
526
|
Chr3: 20845674-20846199 | Arabidopsis thaliana |
| AT3G56190:exon:10 |
81
|
Chr3: 20846289-20846369 | Arabidopsis thaliana |
| AT3G56190:exon:9 |
48
|
Chr3: 20846458-20846505 | Arabidopsis thaliana |
| AT3G56190:exon:8 |
160
|
Chr3: 20846603-20846762 | Arabidopsis thaliana |
| AT3G56190:exon:7 |
152
|
Chr3: 20846993-20847144 | Arabidopsis thaliana |
| AT3G56190:exon:6 |
80
|
Chr3: 20847376-20847455 | Arabidopsis thaliana |
| AT3G56190:exon:4 |
73
|
Chr3: 20847551-20847623 | Arabidopsis thaliana |
| AT3G56190:exon:3 |
50
|
Chr3: 20847710-20847759 | Arabidopsis thaliana |
| AT3G56190:exon:1 |
484
|
Chr3: 20848212-20848695 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G56190:five_prime_UTR:2 |
321
|
Chr3: 20848214-20848534 | Arabidopsis thaliana |
| AT3G56190:five_prime_UTR:1 |
339
|
Chr3: 20848357-20848695 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G56180 | locus:2078506 | AT3G56180 |
1148
|
Chr3: 20844611-20845758 | A. thaliana | LURP-one-like protein (DUF567);(source:Araport11) | NULL | Protein of unknown function (DUF567) | ||
| AT3G56190 | locus:2078366 | ALPHA-SNAP2 | alpha-soluble NSF attachment protein 2 |
3022
|
Chr3: 20845674-20848695 | A. thaliana | alpha-soluble NSF attachment protein 2;(source:Araport11) | Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis | alpha-soluble NSF attachment protein 2 | ALPHA-SNAP2, ASNAP |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT3G56180.2 |
985
|
Chr3: 20844611-20845758 |
| AT3G56180.1 |
857
|
Chr3: 20844667-20845692 |
| AT3G56190.2 |
1489
|
Chr3: 20845674-20848534 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G56180:three_prime_UTR:2 |
210
|
Chr3: 20845549-20845758 | Arabidopsis thaliana |
| AT3G56180:three_prime_UTR:1 |
144
|
Chr3: 20845549-20845692 | Arabidopsis thaliana |
| AT3G56190:three_prime_UTR:1 |
445
|
Chr3: 20845674-20846118 | Arabidopsis thaliana |
