Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1182
 |
| Location: | Chr3:20339504-20341176 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G54890:CDS:5 |
54
|
Chr3: 20339961-20340014 | Arabidopsis thaliana |
| AT3G54890:CDS:3 |
147
|
Chr3: 20340082-20340228 | Arabidopsis thaliana |
| AT3G54890:CDS:2 |
103
|
Chr3: 20340316-20340418 | Arabidopsis thaliana |
| AT3G54890:CDS:1 |
191
|
Chr3: 20340732-20340922 | Arabidopsis thaliana |
| AT3G54890:CDS:8 |
348
|
Chr3: 20339881-20340228 | Arabidopsis thaliana |
| AT3G54890:CDS:2.1 |
103
|
Chr3: 20340316-20340418 | Arabidopsis thaliana |
| AT3G54890:CDS:1.1 |
191
|
Chr3: 20340732-20340922 | Arabidopsis thaliana |
| AT3G54890:CDS:9 |
143
|
Chr3: 20339706-20339848 | Arabidopsis thaliana |
| AT3G54890:CDS:7 |
28
|
Chr3: 20339940-20339967 | Arabidopsis thaliana |
| AT3G54890:CDS:4 |
159
|
Chr3: 20340070-20340228 | Arabidopsis thaliana |
| AT3G54890:CDS:2.2 |
103
|
Chr3: 20340316-20340418 | Arabidopsis thaliana |
| AT3G54890:CDS:1.2 |
191
|
Chr3: 20340732-20340922 | Arabidopsis thaliana |
| AT3G54890:CDS:9.1 |
143
|
Chr3: 20339706-20339848 | Arabidopsis thaliana |
| AT3G54890:CDS:6 |
289
|
Chr3: 20339940-20340228 | Arabidopsis thaliana |
| AT3G54890:CDS:2.3 |
103
|
Chr3: 20340316-20340418 | Arabidopsis thaliana |
| AT3G54890:CDS:1.3 |
191
|
Chr3: 20340732-20340922 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G54890:exon:7 |
75
|
Chr3: 20339940-20340014 | Arabidopsis thaliana |
| AT3G54890:exon:4 |
147
|
Chr3: 20340082-20340228 | Arabidopsis thaliana |
| AT3G54890:exon:9 |
725
|
Chr3: 20339504-20340228 | Arabidopsis thaliana |
| AT3G54890:exon:8 |
28
|
Chr3: 20339940-20339967 | Arabidopsis thaliana |
| AT3G54890:exon:5 |
159
|
Chr3: 20340070-20340228 | Arabidopsis thaliana |
| AT3G54890:exon:2 |
372
|
Chr3: 20340732-20341103 | Arabidopsis thaliana |
| AT3G54890:exon:10 |
345
|
Chr3: 20339504-20339848 | Arabidopsis thaliana |
| AT3G54890:exon:6 |
289
|
Chr3: 20339940-20340228 | Arabidopsis thaliana |
| AT3G54890:exon:3 |
103
|
Chr3: 20340316-20340418 | Arabidopsis thaliana |
| AT3G54890:exon:1 |
445
|
Chr3: 20340732-20341176 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G54890:five_prime_UTR:2 |
181
|
Chr3: 20340923-20341103 | Arabidopsis thaliana |
| AT3G54890:five_prime_UTR:1 |
254
|
Chr3: 20340923-20341176 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G54890 | locus:2082717 | LHCA1 | photosystem I light harvesting complex gene 1 |
1673
|
Chr3: 20339504-20341176 | A. thaliana | chlorophyll a-b binding protein 6;(source:Araport11) | Encodes a component of the light harvesting complex associated with photosystem I. | photosystem I light harvesting complex gene 1 | LHCA1 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT3G54890.3 |
1042
|
Chr3: 20339504-20341103 |
| AT3G54890.4 |
1200
|
Chr3: 20339504-20341103 |
| AT3G54890.2 |
1007
|
Chr3: 20339504-20341103 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G54890:three_prime_UTR:3 |
345
|
Chr3: 20339504-20339848 | Arabidopsis thaliana |
| AT3G54890:three_prime_UTR:1 |
21
|
Chr3: 20339940-20339960 | Arabidopsis thaliana |
| AT3G54890:three_prime_UTR:2 |
377
|
Chr3: 20339504-20339880 | Arabidopsis thaliana |
| AT3G54890:three_prime_UTR:4 |
202
|
Chr3: 20339504-20339705 | Arabidopsis thaliana |
