Genomics
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54110:CDS:1 | 78 | Chr3: 20038890-20038967 | Arabidopsis thaliana |
AT3G54110:CDS:2 | 216 | Chr3: 20039518-20039733 | Arabidopsis thaliana |
AT3G54110:CDS:3 | 79 | Chr3: 20039834-20039912 | Arabidopsis thaliana |
AT3G54110:CDS:4 | 134 | Chr3: 20040006-20040139 | Arabidopsis thaliana |
AT3G54110:CDS:5 | 99 | Chr3: 20040222-20040320 | Arabidopsis thaliana |
AT3G54110:CDS:6 | 105 | Chr3: 20040412-20040516 | Arabidopsis thaliana |
AT3G54110:CDS:7 | 78 | Chr3: 20040600-20040677 | Arabidopsis thaliana |
AT3G54110:CDS:8 | 87 | Chr3: 20040761-20040847 | Arabidopsis thaliana |
AT3G54110:CDS:9 | 45 | Chr3: 20040952-20040996 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54110:exon:1 | 298 | Chr3: 20038670-20038967 | Arabidopsis thaliana |
AT3G54110:exon:2 | 216 | Chr3: 20039518-20039733 | Arabidopsis thaliana |
AT3G54110:exon:3 | 79 | Chr3: 20039834-20039912 | Arabidopsis thaliana |
AT3G54110:exon:4 | 134 | Chr3: 20040006-20040139 | Arabidopsis thaliana |
AT3G54110:exon:5 | 99 | Chr3: 20040222-20040320 | Arabidopsis thaliana |
AT3G54110:exon:6 | 105 | Chr3: 20040412-20040516 | Arabidopsis thaliana |
AT3G54110:exon:7 | 78 | Chr3: 20040600-20040677 | Arabidopsis thaliana |
AT3G54110:exon:8 | 87 | Chr3: 20040761-20040847 | Arabidopsis thaliana |
AT3G54110:exon:9 | 259 | Chr3: 20040952-20041210 | Arabidopsis thaliana |
AT3G54120:exon:4 | 292 | Chr3: 20041126-20041417 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54110:five_prime_UTR:1 | 220 | Chr3: 20038670-20038889 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G54110 | locus:2080300 | PUMP1 | plant uncoupling mitochondrial protein 1 | 2541 | Chr3: 20038670-20041210 | A. thaliana | plant uncoupling mitochondrial protein 1;(source:Araport11) | Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate. The mRNA is cell-to-cell mobile. | plant uncoupling mitochondrial protein 1 | ATPUMP1, ATUCP1, PUMP1, UCP, UCP1 |
AT3G54120 | locus:2080315 | AT3G54120 | 1215 | Chr3: 20041126-20042340 | A. thaliana | Reticulon family protein;(source:Araport11) | NULL | Reticulon family protein |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54110:three_prime_UTR:1 | 214 | Chr3: 20040997-20041210 | Arabidopsis thaliana |
AT3G54120:three_prime_UTR:1 | 143 | Chr3: 20041126-20041268 | Arabidopsis thaliana |