Genomics
Genome feature
| Region: |
mRNA
|
Length: |
1415
 |
| Location: | Chr3:19538957-19541284 reverse strand | ||
Overlapping Features
Genome features that overlap coordinates of this MRNA
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G52720:CDS:6 |
174
|
Chr3: 19538804-19538977 | Arabidopsis thaliana |
| AT3G52720:CDS:4 |
183
|
Chr3: 19539629-19539811 | Arabidopsis thaliana |
| AT3G52720:CDS:3 |
103
|
Chr3: 19539891-19539993 | Arabidopsis thaliana |
| AT3G52720:CDS:2 |
322
|
Chr3: 19540431-19540752 | Arabidopsis thaliana |
| AT3G52720:CDS:1 |
73
|
Chr3: 19541044-19541116 | Arabidopsis thaliana |
| AT3G52720:CDS:6.1 |
174
|
Chr3: 19538804-19538977 | Arabidopsis thaliana |
| AT3G52720:CDS:4.1 |
183
|
Chr3: 19539629-19539811 | Arabidopsis thaliana |
| AT3G52720:CDS:3.1 |
103
|
Chr3: 19539891-19539993 | Arabidopsis thaliana |
| AT3G52720:CDS:2.1 |
322
|
Chr3: 19540431-19540752 | Arabidopsis thaliana |
| AT3G52720:CDS:1.1 |
73
|
Chr3: 19541044-19541116 | Arabidopsis thaliana |
| AT3G52720:CDS:6.2 |
174
|
Chr3: 19538804-19538977 | Arabidopsis thaliana |
| AT3G52720:CDS:4.2 |
183
|
Chr3: 19539629-19539811 | Arabidopsis thaliana |
| AT3G52720:CDS:3.2 |
103
|
Chr3: 19539891-19539993 | Arabidopsis thaliana |
| AT3G52720:CDS:2.2 |
322
|
Chr3: 19540431-19540752 | Arabidopsis thaliana |
| AT3G52720:CDS:1.2 |
73
|
Chr3: 19541044-19541116 | Arabidopsis thaliana |
| AT3G52720:CDS:5 |
195
|
Chr3: 19539617-19539811 | Arabidopsis thaliana |
| AT3G52720:CDS:3.3 |
103
|
Chr3: 19539891-19539993 | Arabidopsis thaliana |
| AT3G52720:CDS:2.3 |
322
|
Chr3: 19540431-19540752 | Arabidopsis thaliana |
| AT3G52720:CDS:1.3 |
73
|
Chr3: 19541044-19541116 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G52720:exon:13 |
438
|
Chr3: 19538540-19538977 | Arabidopsis thaliana |
| AT3G52720:exon:3 |
88
|
Chr3: 19541256-19541343 | Arabidopsis thaliana |
| AT3G52720:exon:12 |
391
|
Chr3: 19538587-19538977 | Arabidopsis thaliana |
| AT3G52720:exon:2 |
905
|
Chr3: 19541256-19542160 | Arabidopsis thaliana |
| AT3G52720:exon:11 |
369
|
Chr3: 19538609-19538977 | Arabidopsis thaliana |
| AT3G52720:exon:9 |
183
|
Chr3: 19539629-19539811 | Arabidopsis thaliana |
| AT3G52720:exon:5 |
241
|
Chr3: 19541044-19541284 | Arabidopsis thaliana |
| AT3G52720:exon:10 |
855
|
Chr3: 19538957-19539811 | Arabidopsis thaliana |
| AT3G52720:exon:8 |
103
|
Chr3: 19539891-19539993 | Arabidopsis thaliana |
| AT3G52720:exon:7 |
322
|
Chr3: 19540431-19540752 | Arabidopsis thaliana |
| AT3G52720:exon:6 |
106
|
Chr3: 19541044-19541149 | Arabidopsis thaliana |
| AT3G52720:exon:4 |
29
|
Chr3: 19541256-19541284 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G52720:five_prime_UTR:3 |
88
|
Chr3: 19541256-19541343 | Arabidopsis thaliana |
| AT3G52720:five_prime_UTR:2 |
905
|
Chr3: 19541256-19542160 | Arabidopsis thaliana |
| AT3G52720:five_prime_UTR:5 |
168
|
Chr3: 19541117-19541284 | Arabidopsis thaliana |
| AT3G52720:five_prime_UTR:6 |
33
|
Chr3: 19541117-19541149 | Arabidopsis thaliana |
| AT3G52720:five_prime_UTR:4 |
29
|
Chr3: 19541256-19541284 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT3G52720 | locus:2083213 | ACA1 | alpha carbonic anhydrase 1 |
3747
|
Chr3: 19538540-19542286 | A. thaliana | alpha carbonic anhydrase 1;(source:Araport11) | Encodes an alpha carbonic anhydrase (CAH1) located in the chloroplast stroma. Most chloroplast proteins are encoded by the nuclear genome and imported with the help of sorting signals that are intrinsic parts of the polypeptides. CAH1 takes an alternative route through the secretory pathway, and becomes N-glycosylated before entering the chloroplast. Glycosylation and intra-molecular disulfide bridge fromation are necessary for the correct folding, ER export, trafficking and activity of the protein. | alpha carbonic anhydrase 1 | ACA1, ATACA1, CAH1 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT3G52720.1 |
1515
|
Chr3: 19538540-19542286 |
| AT3G52720.3 |
2010
|
Chr3: 19538587-19542160 |
| AT3G52720.4 |
1218
|
Chr3: 19538609-19541284 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT3G52720:three_prime_UTR:1 |
660
|
Chr3: 19538957-19539616 | Arabidopsis thaliana |
